[AMBER] Leap: Nuleotides addition

From: Aravind Ravichandran <raravind.ibab.ac.in>
Date: Sat, 8 Sep 2018 17:02:36 +0530

Dear amber users/authors,
 I am planning to simulate diffusion of nucleotides across RNA polymerase.
For this, I have to create systems with various concentrations of NTP.
How do I add NTP to the protein system in leap.
Is there a way to do this in leap?
Or should I prepare the PDB file with protein+nucleotide and then use leap
just to prepare the system (I have the parameters for ATP and GTP)?

Thank you in advance,
Aravind R

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Received on Sat Sep 08 2018 - 05:00:02 PDT
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