Re: [AMBER] Error while creating topology file(HMassRepartition) in parmed

From: David A Case <>
Date: Mon, 24 Sep 2018 07:42:28 -0400

On Mon, Sep 24, 2018, Aravind Ravichandran wrote:
> I tried loading the topology file and coordinate file in chimera, and i
> got the following error:
> fillCoordSet: coordinates [arg 2] must be 2-dimensional array

Additional comment: do you get the same result with either the original
or the HMassRepartition topology? You may need to provide details of
the exact commands you used to load the topology and coordinate files.

It is possible that there is a problem with the HMassRepartition
command, but I doubt that that is the problem. You could look at the
diff output between the to topology files, to confirm that the only
differences are in the masses.


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Received on Mon Sep 24 2018 - 05:00:03 PDT
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