Hello Amber users,
I am trying to remove atoms in a distance of some selected residues, so
that according to ambmask I put this condition:
trajin 03_equil.rst
strip (:1-100<:20.0) outprefix cc.parm7
trajout cc.traj
However, when I do this stripping, it removes just my residues from 1 to
100 and not all the atoms within 20A from my selected residues. I tried
different commands such as "strip :1-100<.20 " or "strip :1-100>:20.0" or
even for waters inside that area: "strip (:1-100<:20.0)&:WAT" to see if
the problem is my script. However, in all of them it just remove my
selected residues. Have you ever had such a problem? I appreciate if you
can help me about this,
Thank you
Hadi
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Received on Wed Sep 19 2018 - 09:00:03 PDT
