Amber Archive Dec 2021: by author

Abhilash J
- Re: [AMBER] Missing DNA base pair in cpptraj analysis (Wed Dec 01 2021 - 16:51:18 PST)
- [AMBER] Missing DNA base pair in cpptraj analysis (Wed Dec 01 2021 - 13:23:22 PST)
Alan
- [AMBER] sqm performance: does it run in parallel? (Thu Dec 30 2021 - 22:47:20 PST)
- [AMBER] tleap: tab complete, highlight, cmd history etc. (Wed Dec 15 2021 - 00:06:06 PST)
- [AMBER] loadpdb and SSBOND (Wed Dec 15 2021 - 00:03:04 PST)
Alexander Izvorski
- [AMBER] TIP4PD water box error (Sun Dec 26 2021 - 14:47:53 PST)
- [AMBER] DE Shaw RNA parameters error (Sun Dec 26 2021 - 14:30:53 PST)
- Re: [AMBER] scientific issue (Sun Dec 26 2021 - 13:29:53 PST)
Alexis Azucena
- [AMBER] Error during 1D-RISM run (Sat Dec 04 2021 - 02:08:42 PST)
- Re: [AMBER] Fortran runtime error during 1D-RISM analysis to generate .xvv file (Thu Dec 02 2021 - 17:31:22 PST)
- [AMBER] Fortran runtime error during 1D-RISM analysis to generate .xvv file (Thu Dec 02 2021 - 02:02:15 PST)
Ali Morshedi
- Re: [AMBER] Error running TI with pmemd.cuda: "Error: an illegal memory access was encountered launching kernel kClearTIKinEnergy_kernel" (Tue Dec 21 2021 - 00:09:53 PST)
- [AMBER] Error running TI with pmemd.cuda: "Error: an illegal memory access was encountered launching kernel kClearTIKinEnergy_kernel" (Mon Dec 20 2021 - 13:50:56 PST)
- [AMBER] Electrostatic energy in TI at lambda=1 for a toy system (Sat Dec 11 2021 - 00:04:27 PST)
angad sharma
- [AMBER] what is origin in DX from 3DRISM (Tue Dec 28 2021 - 05:32:21 PST)
ankita mehta
- Re: [AMBER] problem loading the trajectory files in vmd (Mon Dec 06 2021 - 03:16:58 PST)
- [AMBER] Problem loading crd file in vmd (Fri Dec 03 2021 - 03:58:26 PST)
- [AMBER] problem loading the trajectory files in vmd (Fri Dec 03 2021 - 02:51:09 PST)
Aravind R
- [AMBER] Error with Zn ion Coordination (Sat Dec 11 2021 - 02:21:02 PST)
- Re: [AMBER] Zn ion coordination (Tue Dec 07 2021 - 05:38:31 PST)
- [AMBER] Zn ion coordination (Thu Dec 02 2021 - 05:04:38 PST)
Arooma Maryam
- [AMBER] Query regarding minimization in AMBER 20 (Wed Dec 22 2021 - 13:08:57 PST)
Ayesha Fatima
- Re: [AMBER] open mpi compiler error (Wed Dec 01 2021 - 11:00:44 PST)
Carlos Simmerling
- Re: [AMBER] Dihedral restraint on a C=N double bond (Thu Dec 30 2021 - 13:30:15 PST)
- Re: [AMBER] Advice on Simulated Annealing (Wed Dec 29 2021 - 11:48:19 PST)
- Re: [AMBER] amber docker container (Wed Dec 29 2021 - 05:29:40 PST)
- Re: [AMBER] Query regarding minimization in AMBER 20 (Wed Dec 22 2021 - 14:15:45 PST)
- Re: [AMBER] Issue with defining angle parameters in frcmod files (Wed Dec 22 2021 - 12:19:28 PST)
- Re: [AMBER] Atom types and atom order of lib files and pdb files (Tue Dec 21 2021 - 04:14:47 PST)
- Re: [AMBER] Constant PH simulations (Mon Dec 20 2021 - 09:41:42 PST)
- Re: [AMBER] Atom types and atom order of lib files and pdb files (Mon Dec 20 2021 - 02:22:49 PST)
- Re: [AMBER] second structure (Fri Dec 17 2021 - 10:13:01 PST)
- Re: [AMBER] Old Amber Force Fields (Tue Dec 14 2021 - 09:04:13 PST)
- Re: [AMBER] Peptide's charge is not 0 when getting parm7 and rst7 files (Mon Dec 13 2021 - 14:31:15 PST)
- Re: [AMBER] Peptide's charge is not 0 when getting parm7 and rst7 files (Mon Dec 13 2021 - 14:15:34 PST)
- Re: [AMBER] Peptide's charge is not 0 when getting parm7 and rst7 files (Mon Dec 13 2021 - 14:14:26 PST)
- Re: [AMBER] Neutralizing a protein with unknown charge? (Mon Dec 13 2021 - 13:12:36 PST)
- Re: [AMBER] problem loading the trajectory files in vmd (Mon Dec 06 2021 - 04:32:44 PST)
- Re: [AMBER] problem loading the trajectory files in vmd (Fri Dec 03 2021 - 06:19:58 PST)
- Re: [AMBER] TiMergeError: Cannot have dihedral cross through softcore region. (Thu Dec 02 2021 - 07:24:54 PST)
Casalini Tommaso
- [AMBER] Problems with mdgx - torsional parameters fitting (Tue Dec 21 2021 - 11:35:33 PST)
Ch Bilal
- [AMBER] Ligand problem in system preparation (Tue Dec 28 2021 - 01:17:56 PST)
Charles Lin
- Re: [AMBER] about RAMD (Tue Dec 07 2021 - 17:28:26 PST)
- Re: [AMBER] about RAMD (Mon Dec 06 2021 - 08:51:37 PST)
Chen, Guoquan
- [AMBER] Question about build Amber20 with Intel compiler 2019 (Tue Dec 14 2021 - 12:26:05 PST)
Chris Lee
- Re: [AMBER] CPPTRAJ Segmentation Fault with modified topology file (Mon Dec 20 2021 - 13:40:20 PST)
- [AMBER] CPPTRAJ Segmentation Fault with modified topology file (Mon Dec 20 2021 - 10:58:25 PST)
Damiano Spadoni
- [AMBER] Li salt parameterisation issue (Tue Dec 28 2021 - 07:26:29 PST)
Daniel Roe
- Re: [AMBER] prmtop file generated with CLOSEST in cpptraj (Thu Dec 23 2021 - 06:22:38 PST)
- Re: [AMBER] CPPTRAJ Segmentation Fault with modified topology file (Mon Dec 20 2021 - 13:52:25 PST)
- Re: [AMBER] CPPTRAJ Segmentation Fault with modified topology file (Mon Dec 20 2021 - 11:06:25 PST)
- Re: [AMBER] Hydrogen Bonding Analysis (Mon Dec 20 2021 - 06:56:28 PST)
- Re: [AMBER] problem loading the trajectory files in vmd (Fri Dec 03 2021 - 08:20:01 PST)
- Re: [AMBER] RMSD of residues within 3A of ligand (Wed Dec 01 2021 - 08:30:24 PST)
- Re: [AMBER] How is correlation computed in cpptraj (Wed Dec 01 2021 - 08:24:44 PST)
- Re: [AMBER] Reg: Cpptraj-Hierarchical Agglomerative Reference paper for methodology and result analysis (Wed Dec 01 2021 - 08:21:03 PST)
- Re: [AMBER] Amber calculate RMSF (Wed Dec 01 2021 - 08:19:54 PST)
- Re: [AMBER] water box corrupted by minimization (Wed Dec 01 2021 - 08:14:28 PST)
- Re: [AMBER] How to generate mol2 file with topology and crd file? (Wed Dec 01 2021 - 08:10:34 PST)
- Re: [AMBER] GIST: Entropy calculations (Wed Dec 01 2021 - 08:07:39 PST)
- Re: [AMBER] Dynamic cross correlation matrices in AMBER20 (Wed Dec 01 2021 - 05:52:19 PST)
- Re: [AMBER] Summit compile and "Attempted to read inpcrd as a NetCDF restart file, but failed" (Wed Dec 01 2021 - 05:50:38 PST)
- Re: [AMBER] Protein in mixed of solvents (Wed Dec 01 2021 - 05:47:19 PST)
- Re: [AMBER] Equilibrate and Production Run Membrane-protein complex (Wed Dec 01 2021 - 05:46:36 PST)
- Re: [AMBER] closest ions radiation distribution (Wed Dec 01 2021 - 05:43:11 PST)
- Re: [AMBER] How to interpret clustering (Wed Dec 01 2021 - 05:39:23 PST)
- Re: [AMBER] Problems with RMSD of different proteins. (Wed Dec 01 2021 - 05:26:17 PST)
- Re: [AMBER] A bug in phishi Amber20? (Wed Dec 01 2021 - 05:20:15 PST)
David A Case
- Re: [AMBER] sqm performance: does it run in parallel? (Fri Dec 31 2021 - 05:07:53 PST)
- Re: [AMBER] Advice on Simulated Annealing (Wed Dec 29 2021 - 18:59:09 PST)
- Re: [AMBER] 【Error on testing benz_water_md.reaxff and openMPI】 (Wed Dec 29 2021 - 18:43:09 PST)
- Re: [AMBER] 【Error on testing benz_water_md.reaxff and openMPI】 (Wed Dec 29 2021 - 06:58:44 PST)
- Re: [AMBER] Problem in installation (Tue Dec 28 2021 - 06:47:39 PST)
- Re: [AMBER] Ligand problem in system preparation (Tue Dec 28 2021 - 06:34:43 PST)
- Re: [AMBER] CUDA installation error - CENTOS 7 (Sun Dec 26 2021 - 13:22:45 PST)
- Re: [AMBER] Amber20 CUDA installation error Centos 7 (Fri Dec 24 2021 - 18:30:29 PST)
- Re: [AMBER] Amber20 installation error on Centos 7 (Fri Dec 24 2021 - 06:16:25 PST)
- Re: [AMBER] Amber20 installation error on Centos 7 (Wed Dec 22 2021 - 17:55:31 PST)
- Re: [AMBER] Amber20 installation error on Centos 7 (Tue Dec 21 2021 - 20:32:16 PST)
- Re: [AMBER] Amber installation error on Centos 7 (Tue Dec 21 2021 - 11:13:11 PST)
- Re: [AMBER] Amber20 installation error - Centos 7 (Mon Dec 20 2021 - 18:26:36 PST)
- Re: [AMBER] Amber20 installation error on Centos 7 (Mon Dec 20 2021 - 09:25:19 PST)
- Re: [AMBER] Adding atom types to gaff.dat (Sat Dec 18 2021 - 07:09:00 PST)
- Re: [AMBER] Amber -log4J impact ? (Fri Dec 17 2021 - 17:52:11 PST)
- Re: [AMBER] Question about build Amber20 with Intel compiler 2019 (Fri Dec 17 2021 - 07:17:36 PST)
- [AMBER] Improving our options for pre-compiled AmberTools? (Fri Dec 17 2021 - 07:01:49 PST)
- Re: [AMBER] loadpdb and SSBOND (Thu Dec 16 2021 - 06:14:33 PST)
- Re: [AMBER] numpy error with pdb4amber on cluster (Thu Dec 16 2021 - 05:49:07 PST)
- Re: [AMBER] Parallel test stuck at Run.dhfr.noboxinfo (Wed Dec 15 2021 - 05:45:03 PST)
- Re: [AMBER] numpy error with pdb4amber on cluster (Mon Dec 13 2021 - 06:44:29 PST)
- Re: [AMBER] README script from CHARMM-GUI to run PMEDE.CUDA (Sat Dec 11 2021 - 18:42:51 PST)
- Re: [AMBER] install error for GPU version of Amber20 on A100 GPU card (Fri Dec 10 2021 - 06:35:53 PST)
- Re: [AMBER] Error for installing the GPU version of Amber20 (Wed Dec 08 2021 - 05:50:33 PST)
- Re: [AMBER] GAFF2 "ho" atoms have non-bonded 0 (Wed Dec 08 2021 - 05:23:17 PST)
- Re: [AMBER] Error with MMPBSA (Tue Dec 07 2021 - 04:50:35 PST)
- Re: [AMBER] Error during 1D-RISM run (Sun Dec 05 2021 - 06:12:16 PST)
- Re: [AMBER] Mmpbsa inp=1 or inp=2 (Sun Dec 05 2021 - 06:04:44 PST)
- [AMBER] Addendum on problems about finding CUDA (Sun Dec 05 2021 - 05:56:30 PST)
- Re: [AMBER] run_cmake error for installing the GPU version of Amber20 (Sun Dec 05 2021 - 05:35:24 PST)
- Re: [AMBER] What if MM Energy > QM Energy Even Vn=0 (Sat Dec 04 2021 - 08:40:35 PST)
- Re: [AMBER] numpy error with pdb4amber on cluster (Fri Dec 03 2021 - 05:01:53 PST)
- Re: [AMBER] Amber Installation Error (Thu Dec 02 2021 - 13:29:38 PST)
- Re: [AMBER] Fortran runtime error during 1D-RISM analysis to generate .xvv file (Thu Dec 02 2021 - 05:17:21 PST)
- Re: [AMBER] Installation error amber 20 in ubuntu 20.04 (Thu Dec 02 2021 - 05:10:26 PST)
- Re: [AMBER] installation error amber 18 in ubuntu 20.04 (Wed Dec 01 2021 - 14:16:25 PST)
David Cerutti
- Re: [AMBER] What if MM Energy > QM Energy Even Vn=0 (Mon Dec 13 2021 - 08:06:46 PST)
Debarati DasGupta
- Re: [AMBER] Neutralizing a protein with unknown charge? (Mon Dec 13 2021 - 13:19:15 PST)
- Re: [AMBER] Error with MMPBSA (Tue Dec 07 2021 - 07:44:30 PST)
- Re: [AMBER] Dynamic cross correlation matrices in AMBER20 (Wed Dec 01 2021 - 06:11:21 PST)
Dickson, Callum
- Re: [AMBER] Equilibrate and Production Run Membrane-protein complex (Wed Dec 01 2021 - 11:46:40 PST)
Dr. Anselm Horn
- Re: [AMBER] Non-standard residue parameterization questions (Wed Dec 29 2021 - 01:57:17 PST)
Erdem Yeler
- [AMBER] What if MM Energy > QM Energy Even Vn=0 (Sat Dec 04 2021 - 06:56:43 PST)
Fabian Glaser
- [AMBER] A10 cards (Thu Dec 30 2021 - 06:36:11 PST)
- [AMBER] amber docker container (Wed Dec 29 2021 - 02:07:56 PST)
- Re: [AMBER] Mmpbsa inp=1 or inp=2 (Wed Dec 08 2021 - 05:56:21 PST)
- Re: [AMBER] Mmpbsa inp=1 or inp=2 (Tue Dec 07 2021 - 03:55:07 PST)
- Re: [AMBER] Mmpbsa inp=1 or inp=2 (Sat Dec 04 2021 - 05:23:04 PST)
- [AMBER] Mmpbsa inp=1 or inp=2 (Sat Dec 04 2021 - 02:39:40 PST)
Guessregen, Stefan /DE
- [AMBER] Call for papers - 17th German Conference on Cheminformatics and EuroSAMPL Satellite Workshop, May 8 -12, 2022 in Garmisch-Partenkirchen/Germany (Thu Dec 23 2021 - 09:23:05 PST)
Guodong
- [AMBER] Problem in installation (Tue Dec 28 2021 - 04:28:23 PST)
Gustavo Seabra
- Re: [AMBER] Neutralizing a protein with unknown charge? (Mon Dec 13 2021 - 14:15:13 PST)
- [AMBER] Neutralizing a protein with unknown charge? (Mon Dec 13 2021 - 12:55:47 PST)
Hector A. Baldoni
- Re: [AMBER] Advice on Simulated Annealing (Thu Dec 30 2021 - 08:50:38 PST)
Huimin Tian
- [AMBER] Hydrogen Bonding Analysis (Mon Dec 20 2021 - 01:27:40 PST)
James Kress
- Re: [AMBER] prmtop file generated with CLOSEST in cpptraj (Thu Dec 23 2021 - 11:09:59 PST)
- [AMBER] prmtop file generated with CLOSEST in cpptraj (Wed Dec 22 2021 - 16:04:41 PST)
- [AMBER] Q-Chem and GPU use (Mon Dec 13 2021 - 12:57:48 PST)
Jason Hogrefe
- Re: [AMBER] A10 cards (Thu Dec 30 2021 - 06:52:08 PST)
jinfeng liu
- Re: [AMBER] install error for GPU version of Amber20 on A100 GPU card (Fri Dec 10 2021 - 07:52:01 PST)
- [AMBER] install error for GPU version of Amber20 on A100 GPU card (Fri Dec 10 2021 - 04:30:46 PST)
- [AMBER] Error for installing the GPU version of Amber20 (Tue Dec 07 2021 - 19:54:24 PST)
- Re: [AMBER] run_cmake error for installing the GPU version of Amber20 (Sun Dec 05 2021 - 19:02:07 PST)
- [AMBER] run_cmake error for installing the GPU version of Amber20 (Sat Dec 04 2021 - 22:52:06 PST)
Joanna Michelle E. Chua
- Re: [AMBER] Error for installing the GPU version of Amber20 (Tue Dec 14 2021 - 20:18:27 PST)
- [AMBER] Installation error amber 20 in ubuntu 20.04 (Wed Dec 01 2021 - 19:43:29 PST)
Kehinde Idowu
- Re: [AMBER] Error with MMPBSA (Tue Dec 07 2021 - 08:59:54 PST)
- [AMBER] Error with MMPBSA (Mon Dec 06 2021 - 18:06:28 PST)
King Wu
- [AMBER] README script from CHARMM-GUI to run PMEDE.CUDA (Sat Dec 11 2021 - 06:31:33 PST)
- [AMBER] size (info) difference in traj file format: nc vs mdcrd (Wed Dec 01 2021 - 10:25:47 PST)
- Re: [AMBER] Equilibrate and Production Run Membrane-protein complex (Wed Dec 01 2021 - 10:21:40 PST)
Liao
- Re: [AMBER] Dihedral restraint on a C=N double bond (Thu Dec 30 2021 - 17:55:31 PST)
- [AMBER] Dihedral restraint on a C=N double bond (Thu Dec 30 2021 - 12:11:54 PST)
Maria Nagan
- Re: [AMBER] Error with Zn ion Coordination (Sun Dec 12 2021 - 17:06:50 PST)
Mark Dixon
- Re: [AMBER] amber20 - test suite picks up the wrong libgfortran (Tue Dec 21 2021 - 07:55:30 PST)
Matias Machado
- Re: [AMBER] Improving our options for pre-compiled AmberTools? (Fri Dec 17 2021 - 10:42:12 PST)
- Re: [AMBER] Neutralizing a protein with unknown charge? (Mon Dec 13 2021 - 13:20:10 PST)
- Re: [AMBER] problem loading the trajectory files in vmd (Mon Dec 06 2021 - 13:55:07 PST)
Matthew Guberman-Pfeffer
- [AMBER] MCPB, how to treat protein-attached Ru-dye (Thu Dec 30 2021 - 09:48:49 PST)
- Re: [AMBER] Advice on Simulated Annealing (Thu Dec 30 2021 - 09:45:46 PST)
- Re: [AMBER] Advice on Simulated Annealing (Thu Dec 30 2021 - 08:00:57 PST)
- [AMBER] Advice on Simulated Annealing (Wed Dec 29 2021 - 10:39:23 PST)
- Re: [AMBER] Non-standard residue parameterization questions (Wed Dec 29 2021 - 10:26:27 PST)
- [AMBER] Non-standard residue parameterization questions (Tue Dec 28 2021 - 20:54:10 PST)
- [AMBER] MCPB, how to treat protein-attached Ru-dye (Sat Dec 25 2021 - 21:05:28 PST)
- [AMBER] Non-standard residue parameterization quesitons (Sat Dec 25 2021 - 16:24:21 PST)
- [AMBER] Help parameterizing iron citrate (Thu Dec 16 2021 - 23:29:00 PST)
- [AMBER] Meaning of "Multiple 'e' in NUMBER-like thing" (Sun Dec 05 2021 - 14:57:44 PST)
Mohamed Aboelnga
- Re: [AMBER] problem loading the trajectory files in vmd (Fri Dec 03 2021 - 04:37:51 PST)
- Re: [AMBER] problem loading the trajectory files in vmd (Fri Dec 03 2021 - 04:24:42 PST)
mohamed marzouk
- [AMBER] Adjust system in certain axis (Thu Dec 23 2021 - 16:31:01 PST)
Monsurat M. Lawal
- Re: [AMBER] Error with MMPBSA (Wed Dec 08 2021 - 05:36:30 PST)
- Re: [AMBER] Error with MMPBSA (Tue Dec 07 2021 - 04:51:33 PST)
- Re: [AMBER] Some errors for the membrane system (Wed Dec 01 2021 - 11:43:13 PST)
Nagar, Hemant
- [AMBER] Non periodic system in Amber (Wed Dec 15 2021 - 16:04:04 PST)
- [AMBER] Non-periodic boundry condition simulation (Wed Dec 01 2021 - 15:27:43 PST)
ning
- [AMBER] How to build one metal ions surrounding with two ligands by MCPB.py (Fri Dec 24 2021 - 19:35:38 PST)
Niransha Kumarachchi
- [AMBER] Old Amber Force Fields (Tue Dec 14 2021 - 08:35:27 PST)
Pengfei Li
- Re: [AMBER] Adding atom types to gaff.dat (Tue Dec 21 2021 - 07:59:29 PST)
- Re: [AMBER] Zn ion coordination (Fri Dec 17 2021 - 17:04:48 PST)
Prithviraj Nandigrami
- [AMBER] amber pmemd.cuda for implicit solvent simulations (Wed Dec 15 2021 - 11:45:11 PST)
Priya Dey
- Re: [AMBER] problem loading the trajectory files in vmd (Fri Dec 03 2021 - 03:58:20 PST)
Qinghua Liao
- [AMBER] bond equilibrium achieved with sander but not with pmemd, Amber 20 (Wed Dec 01 2021 - 03:03:31 PST)
Rafał Madaj
- Re: [AMBER] Error running TI with pmemd.cuda: "Error: an illegal memory access was encountered launching kernel kClearTIKinEnergy_kernel" (Mon Dec 20 2021 - 23:56:42 PST)
Rituparna Roy
- [AMBER] Parameters for Boron nitride (Wed Dec 22 2021 - 21:44:56 PST)
Sadaf Rani
- [AMBER] How to restart a MMPBSA job (Thu Dec 16 2021 - 13:13:40 PST)
Saikat Pal
- Re: [AMBER] TiMergeError: Cannot have dihedral cross through softcore region. (Thu Dec 02 2021 - 07:53:57 PST)
- [AMBER] TiMergeError: Cannot have dihedral cross through softcore region. (Thu Dec 02 2021 - 07:07:12 PST)
- [AMBER] TiMergeError: Cannot have dihedral cross through softcore region. (Wed Dec 01 2021 - 11:09:11 PST)
Sam Walsworth (Researcher)
- [AMBER] Handling new atom types - bonded (Thu Dec 23 2021 - 07:49:58 PST)
- Re: [AMBER] Issue with defining angle parameters in frcmod files (Wed Dec 22 2021 - 17:03:46 PST)
- [AMBER] Issue with defining angle parameters in frcmod files (Wed Dec 22 2021 - 11:21:46 PST)
- [AMBER] Creating library files - optimised or docked structure? (Tue Dec 21 2021 - 16:45:09 PST)
- Re: [AMBER] Atom types and atom order of lib files and pdb files (Mon Dec 20 2021 - 05:23:27 PST)
- [AMBER] Atom types and atom order of lib files and pdb files (Sun Dec 19 2021 - 15:28:39 PST)
- [AMBER] Adding atom types to gaff.dat (Fri Dec 17 2021 - 21:50:00 PST)
Sepideh Jafari
- [AMBER] second structure (Fri Dec 17 2021 - 19:12:35 PST)
Shang-Wei Li (TMU)
- [AMBER] 【Error on testing benz_water_md.reaxff and openMPI】 (Tue Dec 28 2021 - 17:31:01 PST)
Sruthi Sudhakar
- [AMBER] Constant PH simulations (Mon Dec 20 2021 - 09:38:00 PST)
Stefan Doerr
- Re: [AMBER] GAFF2 "ho" atoms have non-bonded 0 (Mon Dec 13 2021 - 07:13:41 PST)
- [AMBER] GAFF2 "ho" atoms have non-bonded 0 (Wed Dec 08 2021 - 02:47:54 PST)
Suguna Sakkiah
- [AMBER] CUDA installation error - CENTOS 7 (Sun Dec 26 2021 - 12:30:16 PST)
- [AMBER] Amber20 CUDA installation error Centos 7 (Fri Dec 24 2021 - 15:52:51 PST)
- Re: [AMBER] Amber20 installation error on Centos 7 (Fri Dec 24 2021 - 15:35:48 PST)
- Re: [AMBER] Amber20 installation error on Centos 7 (Thu Dec 23 2021 - 11:01:22 PST)
- Re: [AMBER] Amber20 installation error on Centos 7 (Wed Dec 22 2021 - 07:42:42 PST)
- [AMBER] Amber20 installation error on Centos 7 (Tue Dec 21 2021 - 11:33:11 PST)
- [AMBER] Amber installation error on Centos 7 (Tue Dec 21 2021 - 11:00:58 PST)
- [AMBER] Amber20 installation error - Centos 7 (Mon Dec 20 2021 - 12:56:46 PST)
- [AMBER] Amber20 installation error on Centos 7 (Fri Dec 17 2021 - 10:04:58 PST)
- [AMBER] Amber Installation Error (Thu Dec 02 2021 - 11:26:26 PST)
Surajit Kalita
- [AMBER] Frequency unit used for Oscillating electric field (Thu Dec 23 2021 - 09:43:04 PST)
Thomas Cheatham
- Re: [AMBER] size (info) difference in traj file format: nc vs mdcrd (Wed Dec 01 2021 - 10:56:32 PST)
tluchko
- Re: [AMBER] what is origin in DX from 3DRISM (Thu Dec 30 2021 - 10:44:41 PST)
- Re: [AMBER] Fortran runtime error during 1D-RISM analysis to generate .xvv file (Thu Dec 02 2021 - 10:01:10 PST)
Tru Huynh
- Re: [AMBER] run_cmake error for installing the GPU version of Amber20 (Mon Dec 06 2021 - 00:23:59 PST)
Vaibhav Dixit
- Re: [AMBER] numpy error with pdb4amber on cluster (Thu Dec 16 2021 - 20:18:45 PST)
- Re: [AMBER] numpy error with pdb4amber on cluster (Thu Dec 16 2021 - 05:04:07 PST)
- [AMBER] permission error installing amber20 (Sun Dec 12 2021 - 20:33:35 PST)
- Re: [AMBER] numpy error with pdb4amber on cluster (Sat Dec 11 2021 - 21:34:04 PST)
- [AMBER] numpy error with pdb4amber on cluster (Thu Dec 02 2021 - 19:51:01 PST)
Yen Nguyen
- Re: [AMBER] Peptide's charge is not 0 when getting parm7 and rst7 files (Mon Dec 13 2021 - 14:40:29 PST)
- Re: [AMBER] Peptide's charge is not 0 when getting parm7 and rst7 files (Mon Dec 13 2021 - 14:25:06 PST)
- [AMBER] Peptide's charge is not 0 when getting parm7 and rst7 files (Mon Dec 13 2021 - 14:13:17 PST)
- Re: [AMBER] How to add an amidated residue at the C-terminal in AMBER tleap ? (Mon Dec 13 2021 - 10:35:24 PST)
Yi Ren
- [AMBER] Inquiry about an error message when I constructing the frcmod file for my organometallic complex (Wed Dec 15 2021 - 17:22:43 PST)
Yu Chen
- Re: [AMBER] Parallel test stuck at Run.dhfr.noboxinfo (Wed Dec 15 2021 - 06:57:18 PST)
- [AMBER] Parallel test stuck at Run.dhfr.noboxinfo (Tue Dec 14 2021 - 12:48:23 PST)
余青芬
- [AMBER] A bug in phishi Amber20? (Wed Dec 01 2021 - 02:04:07 PST)
周丽萍
- [AMBER] Problems about quasi-harmonic (Wed Dec 22 2021 - 18:02:40 PST)
- [AMBER] CHAMBER prmtops cannot be used with NMODE (Mon Dec 13 2021 - 23:01:24 PST)
王金玉
- [AMBER] Extending constant pH to additional titratable groups (Sun Dec 26 2021 - 06:44:58 PST)
田佳琪
- Re: [AMBER] about RAMD (Tue Dec 07 2021 - 00:54:35 PST)
- [AMBER] about RAMD (Sun Dec 05 2021 - 23:00:11 PST)
辛志宏
- [AMBER] How to generate coordinate and parameter files for OXY bind with copper ions in the protein structure (Tue Dec 28 2021 - 04:37:09 PST)
- [AMBER] ISSUE About Abmer prep file can not recoganized by TAO package (Wed Dec 15 2021 - 00:44:18 PST)
鱼翔
- [AMBER] Thermodynamic integration in tutorial 9 (Tue Dec 21 2021 - 17:46:39 PST)
- [AMBER] Thermodynamic integration in tutorial 9 (Mon Dec 13 2021 - 16:29:03 PST)

Amber Archive Dec 2021 by author