This is possible using cpptraj, the manual describes it in detail. There is
also a tutorial at
https://amberhub.chpc.utah.edu/secstruct/
On Fri, Dec 17, 2021, 12:41 PM Sepideh Jafari <sepidejafari71.gmail.com>
wrote:
> Dear amber users,
>
> Would you please help me with the second structure script during molecular
> dynamic simulation in amber?
>
> Thank you in advance.
>
> Best,
> Sepideh
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Received on Fri Dec 17 2021 - 10:30:02 PST
