On Sun, Dec 26, 2021, Suguna Sakkiah wrote:
>
>I successfully ran the serial test run. Then I changed my run_cmake file
>(-DCUDA=TRUE). When I try to run the make install after the ./run_cmake it
>shows the following error
I recognize that you have been very reluctant to share any infomation about
what compilers you are using, but without such information, I'm sure there
is much anyone on the list can do to help out.
It looks like your compilers are somewhere around version 4.8, and your CUDA
DSK is at version 11 or 12. But I have to guess at lot here.
I'm cc-ing this to Ray Luo, who might know something more about this
particular error.
...dac
>
>[ 76%] Building NVCC (Device) object AmberTools/src/pbsa/CMakeFiles/pbsa.cuda.dir/pbsa.cuda_generated_cuda_LinearSolvers.cu.o
>In file included from /usr/local/cuda/include/thrust/detail/config/config.h:27:0,
> from /usr/local/cuda/include/thrust/detail/config.h:23,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/detail/config.h:23,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/dia_matrix.h:23,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/cuda_LinearSolvers.cu:18:
>/usr/local/cuda/include/thrust/detail/config/cpp_dialect.h:110:13: warning: Thrust requires at least GCC 5.0. Define THRUST_IGNORE_DEPRECATED_CPP_DIALECT to suppress this message. [enabled by default]
> THRUST_COMPILER_DEPRECATION(GCC 5.0);
> ^
>/usr/local/cuda/include/thrust/detail/config/cpp_dialect.h:128:13: warning: Thrust requires at least C++14. Define THRUST_IGNORE_DEPRECATED_CPP_DIALECT to suppress this message. [enabled by default]
> THRUST_COMPILER_DEPRECATION(C++14);
> ^
>In file included from /usr/include/c++/4.8.2/type_traits:35:0,
> from /usr/local/cuda/include/thrust/detail/type_traits/pointer_traits.h:25,
> from /usr/local/cuda/include/thrust/detail/raw_pointer_cast.h:20,
> from /usr/local/cuda/include/thrust/detail/execute_with_allocator.h:23,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/system/cpp/detail/par.h:21,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/iterator/detail/host_system_tag.h:23,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/iterator/iterator_traits.h:37,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/memory.h:25,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/array1d.h:26,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/dia_matrix.h:25,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/cuda_LinearSolvers.cu:18:
>/usr/include/c++/4.8.2/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options.
>#error This file requires compiler and library support for the \
> ^
>In file included from /usr/local/cuda/include/cub/util_arch.cuh:36:0,
> from /usr/local/cuda/include/thrust/system/cuda/detail/util.h:32,
> from /usr/local/cuda/include/thrust/system/cuda/detail/par.h:32,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/system/cuda/detail/execution_policy.h:29,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/system/cuda/detail/par.h:20,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/iterator/detail/device_system_tag.h:23,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/iterator/iterator_traits.h:38,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/memory.h:25,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/array1d.h:26,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/dia_matrix.h:25,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/cuda_LinearSolvers.cu:18:
>/usr/local/cuda/include/cub/util_cpp_dialect.cuh:121:13: warning: CUB requires at least GCC 5.0. Define CUB_IGNORE_DEPRECATED_CPP_DIALECT to suppress this message. [enabled by default]
> CUB_COMPILER_DEPRECATION(GCC 5.0);
> ^
>/usr/local/cuda/include/cub/util_cpp_dialect.cuh:139:13: warning: CUB requires at least C++14. Define CUB_IGNORE_DEPRECATED_CPP_DIALECT to suppress this message. [enabled by default]
> CUB_COMPILER_DEPRECATION(C++14);
> ^
>In file included from /usr/local/cuda/include/thrust/detail/type_deduction.h:11:0,
> from /usr/local/cuda/include/thrust/detail/functional/operators/operator_adaptors.h:21,
> from /usr/local/cuda/include/thrust/detail/functional/operators/assignment_operator.h:22,
> from /usr/local/cuda/include/thrust/detail/functional/actor.h:32,
> from /usr/local/cuda/include/thrust/detail/functional/placeholder.h:20,
> from /usr/local/cuda/include/thrust/functional.h:26,
> from /usr/local/cuda/include/thrust/system/detail/error_category.inl:22,
> from /usr/local/cuda/include/thrust/system/error_code.h:520,
> from /usr/local/cuda/include/thrust/system_error.h:49,
> from /usr/local/cuda/include/thrust/system/cuda/detail/util.h:34,
> from /usr/local/cuda/include/thrust/system/cuda/detail/par.h:32,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/system/cuda/detail/execution_policy.h:29,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/system/cuda/detail/par.h:20,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/iterator/detail/device_system_tag.h:23,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/iterator/iterator_traits.h:38,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/memory.h:25,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/array1d.h:26,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/../cusplibrary-cuda9/cusp/dia_matrix.h:25,
> from /data/Amber/amber20_src/AmberTools/src/pbsa/cuda_LinearSolvers.cu:18:
>/usr/local/cuda/include/thrust/detail/cpp11_required.h:23:6: error: #error C++11 is required for this Thrust feature; please upgrade your compiler or pass the appropriate -std=c++XX flag to it.
># error C++11 is required for this Thrust feature; please upgrade your compiler or pass the appropriate -std=c++XX flag to it.
> ^
>CMake Error at pbsa.cuda_generated_cuda_LinearSolvers.cu.o.RELEASE.cmake:220 (message):
> Error generating
> /data/Amber/amber20_src/build/AmberTools/src/pbsa/CMakeFiles/pbsa.cuda.dir//./pbsa.cuda_generated_cuda_LinearSolvers.cu.o
>
>
>make[2]: *** [AmberTools/src/pbsa/CMakeFiles/pbsa.cuda.dir/pbsa.cuda_generated_cuda_LinearSolvers.cu.o] Error 1
>make[1]: *** [AmberTools/src/pbsa/CMakeFiles/pbsa.cuda.dir/all] Error 2
>make: *** [all] Error 2
>
>Regards
>Suguna
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Received on Sun Dec 26 2021 - 13:30:02 PST
