Dear Amber Users,
I am trying to model a protein with two Zn ions (One coordinated with 4
CYS whereas the other coordinated with 2 CYS and 2 HIS (one in HIE and one
in HID protonation states)). I saw that Zn with 4 CYS can be modelled using
Center ID 1 from ZAFF. The closest I can find for other Zn is Center ID 4
which when used shows some torsions are missing.
What is the best way to model this system?
Any help is appreciated.
Regards,
Aravind R
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Received on Thu Dec 02 2021 - 05:30:02 PST
