Re: [AMBER] Zn ion coordination

From: Aravind R <>
Date: Tue, 7 Dec 2021 19:08:31 +0530

Dear Amber Users,
 I am trying to model a protein with two Zn ions (One coordinated with 4
CYS whereas the other coordinated with 2 CYS and 2 HIS (one in HIE and one
in HID protonation states)). I saw that Zn with 4 CYS can be modelled using
Center ID 1 from ZAFF. The closest I can find for other Zn is Center ID 4
which when used shows, lengths, angles & torsions are missing for
interactions containing two Zn.
What is the best way to model this system?
Any help is appreciated.
Aravind R
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Received on Tue Dec 07 2021 - 06:00:02 PST
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