Re: [AMBER] numpy error with pdb4amber on cluster

From: David A Case <david.case.rutgers.edu>
Date: Thu, 16 Dec 2021 08:49:07 -0500

On Thu, Dec 16, 2021, Vaibhav Dixit wrote:

>-- Using cached Miniconda installer at
>/scratch/vaibhavdixit.bitspilani/amber20_src/build/CMakeFiles/miniconda/download/Miniconda3-latest-Linux-x86_64.sh

>error while loading shared libraries: libz.so.1: failed to map segment from
>shared object: Operation not permitted

Here is a relevant Google hit:

    https://stackoverflow.com/questions/60106630/conda-exe-error-while-loading-shared-libraries-libz-so-1

Basically, it seems likely that your /tmp folder has odd permissions. Try
the fixes suggested in the above post.

....dac


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Dec 16 2021 - 06:00:02 PST
Custom Search