Hi All,
I changed the -DCUDA=TRUE in run_cmake file but getting the below error message. export CUDA_HOME=/usr/local/cuda in bashrc file
My run_cmake content
cmake $AMBER_PREFIX/amber20_src \
-DCMAKE_INSTALL_PREFIX=$AMBER_PREFIX/amber20 \
-DCOMPILER=GNU \
-DTRUST_SYSTEM_LIBS=TRUE \
-DMPI=FALSE -DCUDA=TRUE -DINSTALL_TESTS=TRUE \
-DDOWNLOAD_MINICONDA=TRUE -DMINICONDA_USE_PY3=TRUE \
-DINSTALL_TESTS=TRUE \
2>&1 | tee cmake.log
ERROR MESSAGE.
(base) [root.schrogpu1 build]# make install
[ 1%] Built target readline
[ 2%] Built target dispatch
[ 2%] Built target netcdf3
[ 2%] Built target netcdf
[ 2%] Linking C executable ncgen
/opt/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/9.3.0/../../../../x86_64-conda-linux-gnu/bin/ld: /usr/lib64/libm.so: undefined reference to `__strtod_nan.GLIBC_PRIVATE'
/opt/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/9.3.0/../../../../x86_64-conda-linux-gnu/bin/ld: /usr/lib64/libm.so: undefined reference to `__strtof_nan.GLIBC_PRIVATE'
/opt/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/9.3.0/../../../../x86_64-conda-linux-gnu/bin/ld: /usr/lib64/libz.so: undefined reference to `memcpy.GLIBC_2.14'
/opt/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/9.3.0/../../../../x86_64-conda-linux-gnu/bin/ld: /usr/lib64/libm.so: undefined reference to `__strtold_nan.GLIBC_PRIVATE'
collect2: error: ld returned 1 exit status
make[2]: *** [AmberTools/src/netcdf-4.6.1/ncgen/ncgen] Error 1
make[1]: *** [AmberTools/src/netcdf-4.6.1/ncgen/CMakeFiles/ncgen.dir/all] Error 2
make: *** [all] Error 2
Regards
Suguna
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Received on Fri Dec 24 2021 - 16:00:03 PST
