Hi,
On Fri, Dec 3, 2021 at 9:21 AM Carlos Simmerling
<carlos.simmerling.gmail.com> wrote:
> for a list of the format keywords and automatic extensions, look at this
> page:
> https://amber-md.github.io/cpptraj/CPPTRAJ.xhtml#tab:cpptraj-trajformats
>
> there is no need to convert to dcd, pdb or other non-amber formats (unless
> that's what you want to do, of course).
Some points in favor of using the DCD format on windows is that being
binary, it will be smaller than the ASCII format and will process
faster. However, if you need it to be human readable for some reason
use the ASCII format. Make sure you are using an up-to-date version of
cpptraj to do the conversion (from AT21 is fine, but GitHub
preferred).
-Dan
>
> On Fri, Dec 3, 2021 at 5:52 AM ankita mehta <mehtaroadies.gmail.com> wrote:
>
> > Hello,
> > I am trying to load the trajectory files .mdcrd files in vmd on windows.
> > My simulations were run on Amber.
> > But everytime i load the files , the following error message is displayed
> > on the vmd windows.
> > It says " problem reading the crd file".
> > I followed following steps:
> > 1. select "new molecule "
> > 2. Load "parm file " and select file type as "Amber parm 7".
> > 3. Then load the trajectory file as "mdcrd" file and select file type as "
> > Amber coordinates' '.
> > 4. error message displays on the VMD windows "Problem reading CRD file".
> >
> > P.S. - -I have a windows operating system.
> >
> > Any help is appreciated !
> >
> > TIA!
> > Ankita
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> >
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Received on Fri Dec 03 2021 - 08:30:02 PST
