Re: [AMBER] Parallel test stuck at Run.dhfr.noboxinfo

From: Yu Chen <chenyu.umbc.edu>
Date: Wed, 15 Dec 2021 09:57:18 -0500

Thanks! will do.

And I did do a google search on this, but didn't get that result ... (I
always wonder why people don't do a google search before they ask ..., I
guess sometimes it just happens, will search harder next time. )

y.c.


On Wed, Dec 15, 2021 at 8:45 AM David A Case <david.case.rutgers.edu> wrote:

> On Tue, Dec 14, 2021, Yu Chen wrote:
> >
> >I tried to install Amber 20 with AmberTools 21 on Ubuntu 20.04, using
> >gcc/8.4.0 and openmpi-1.10.7.
>
> You should upgrade openmpi. Version 1.10 is listed as "ancient"
> at https://www.open-mpi.org/software/ompi/v4.1/, and the current supported
> version is version 4.0.7. Back in 2017, it was reported that openmpi 1.10
> fails in exactly the way you see:
>
> http://archive.ambermd.org/201701/0578.html
>
> Upgrading openmpi solved the problem back in 2017, so I hope the upgrade
> fix
> will still work for you.
>
> ....dac
>
> p.s. I found the message above by doing a Google search on "amber
> Run.dhfr.noboxinfo". It's surprising how often doing a search on a Amber
> error message will lead to useful information.
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Dec 15 2021 - 07:00:02 PST
Custom Search