Amber Archive Nov 2021: by subject

[AMBER] "unknown flag: filename.top" error with PMEMD and topology file from CHARMM-GUI
- David A Case (Mon Nov 22 2021 - 19:26:17 PST)
- Chris Lee (Mon Nov 22 2021 - 17:25:27 PST)
[AMBER] [MCPB] Why is the wrong file generated in tleap.in
- Huimin Tian (Thu Nov 25 2021 - 22:54:48 PST)
[AMBER] about pmemd.cuda
- David A Case (Wed Nov 03 2021 - 05:09:41 PDT)
- 田佳琪 (Tue Nov 02 2021 - 20:55:13 PDT)
[AMBER] Amber calculate RMSF
- Carlos Simmerling (Fri Nov 05 2021 - 04:20:52 PDT)
- 吴晓东 (Thu Nov 04 2021 - 17:29:51 PDT)
[AMBER] Amber installation error for Intel Xeon machine (ubuntu 20.04)
- David A Case (Tue Nov 02 2021 - 16:58:59 PDT)
- Chen, Guoquan (Tue Nov 02 2021 - 14:51:25 PDT)
[AMBER] Amber MD NAN (1-4 NB = ************** 1-4 EEL = ************** )
- mish (Fri Nov 05 2021 - 07:19:22 PDT)
- Carlos Simmerling (Fri Nov 05 2021 - 06:54:53 PDT)
- David A Case (Fri Nov 05 2021 - 06:38:01 PDT)
- mish (Wed Nov 03 2021 - 13:49:05 PDT)
- David A Case (Wed Nov 03 2021 - 12:14:25 PDT)
- mish (Wed Nov 03 2021 - 09:52:19 PDT)
[AMBER] amber20 - cmake cannot find cuda
- David A Case (Thu Nov 11 2021 - 17:58:40 PST)
- Vinicius Wilian Cruzeiro (Thu Nov 11 2021 - 09:05:12 PST)
- Fabian Glaser (Thu Nov 11 2021 - 08:21:51 PST)
[AMBER] amber20 - test suite picks up the wrong libgfortran
- David A Case (Fri Nov 26 2021 - 18:11:12 PST)
- Mark Dixon (Fri Nov 26 2021 - 06:55:24 PST)
- David A Case (Fri Nov 26 2021 - 06:15:16 PST)
- Mark Dixon (Fri Nov 26 2021 - 00:46:24 PST)
- David A Case (Tue Nov 23 2021 - 09:17:12 PST)
- Mark Dixon (Mon Nov 22 2021 - 09:12:07 PST)
[AMBER] antechamber use for two unit ligand
- Rana Rehan Khalid (Sat Nov 06 2021 - 06:32:17 PDT)
- David A Case (Sat Nov 06 2021 - 06:25:54 PDT)
- Hector A. Baldoni (Fri Nov 05 2021 - 15:09:34 PDT)
- Rana Rehan Khalid (Fri Nov 05 2021 - 13:30:08 PDT)
[AMBER] Available postdoctoral position
- Reza Khayat (Tue Nov 23 2021 - 11:12:43 PST)
[AMBER] Bug Encountered When sourcing GAFF in leap.in
- David A Case (Tue Nov 16 2021 - 08:56:14 PST)
- Vollmers, Luis (Tue Nov 16 2021 - 07:28:27 PST)
[AMBER] Building Forcefield for Glycolipid Molecule
- Dr. Anselm Horn (Mon Nov 15 2021 - 03:13:39 PST)
- Razil Tahir (Fri Nov 12 2021 - 22:37:51 PST)
[AMBER] Can Parmed convert AMBER files to GROMACS made with the AMBER19SB ?
- ABEL Stephane (Wed Nov 17 2021 - 02:26:15 PST)
- Jason Swails (Tue Nov 16 2021 - 19:16:58 PST)
- ABEL Stephane (Tue Nov 16 2021 - 09:39:07 PST)
- Carlos Simmerling (Tue Nov 16 2021 - 09:31:06 PST)
- ABEL Stephane (Tue Nov 16 2021 - 09:29:50 PST)
- Matias Machado (Tue Nov 16 2021 - 07:06:05 PST)
- Alan (Tue Nov 16 2021 - 00:28:13 PST)
- ABEL Stephane (Mon Nov 15 2021 - 07:48:29 PST)
- Carlos Simmerling (Mon Nov 15 2021 - 05:28:50 PST)
- ABEL Stephane (Mon Nov 15 2021 - 05:11:52 PST)
[AMBER] Can Parmed convert AMBER files to GROMACS made with the AMBER19SB ? -- closed
- Alan (Mon Nov 22 2021 - 11:22:58 PST)
- ABEL Stephane (Mon Nov 22 2021 - 08:31:43 PST)
[AMBER] Can Parmed convert AMBER files to GROMACS made with the AMBER19SB ? --update
- Jason Swails (Mon Nov 22 2021 - 05:52:25 PST)
- ABEL Stephane (Thu Nov 18 2021 - 04:23:18 PST)
[AMBER] CartHess2FC
- Jon Uranga (Tue Nov 02 2021 - 04:32:53 PDT)
[AMBER] Cellulose-COOH modification
- Arash Elahi (Tue Nov 09 2021 - 11:41:21 PST)
- Arash Elahi (Mon Nov 08 2021 - 19:57:11 PST)
[AMBER] closest ions radiation distribution
- Vaibhav Dixit (Thu Nov 25 2021 - 01:28:15 PST)
[AMBER] Compilation error
- Ruibin Liu (Tue Nov 16 2021 - 07:03:23 PST)
[AMBER] Compilation Instructions for Mac M1?
- David A Case (Tue Nov 16 2021 - 18:11:40 PST)
- Brandon Orzolek (Tue Nov 16 2021 - 17:05:03 PST)
[AMBER] Could tleap read in parameter and restart file instead of PDB or mol2?
- Carlos Simmerling (Sun Nov 07 2021 - 07:43:01 PST)
- Liao (Sun Nov 07 2021 - 06:59:41 PST)
- Carlos Simmerling (Sun Nov 07 2021 - 03:32:21 PST)
- Liao (Sat Nov 06 2021 - 13:15:55 PDT)
[AMBER] CPPTRAJ
- David A Case (Wed Nov 10 2021 - 18:50:33 PST)
- Rana Rehan Khalid (Wed Nov 10 2021 - 11:57:02 PST)
- Rana Rehan Khalid (Wed Nov 10 2021 - 10:38:18 PST)
[AMBER] cpptraj error with github version ubuntu 20.04
- Vaibhav Dixit (Mon Nov 08 2021 - 06:58:22 PST)
- Daniel Roe (Mon Nov 08 2021 - 05:35:24 PST)
- Vaibhav Dixit (Mon Nov 08 2021 - 01:49:36 PST)
- Vaibhav Dixit (Mon Nov 08 2021 - 01:31:17 PST)
[AMBER] CUDA INSTALLATION FAILED (Error: Symbol ‘atompositions_fce’ at (1) has no IMPLICIT type)
- Akash Deep Biswas (Fri Nov 05 2021 - 06:17:37 PDT)
- David A Case (Thu Nov 04 2021 - 12:53:37 PDT)
- Akash Deep Biswas (Thu Nov 04 2021 - 07:19:39 PDT)
- David A Case (Thu Nov 04 2021 - 05:44:28 PDT)
- Akash Deep Biswas (Thu Nov 04 2021 - 04:38:09 PDT)
[AMBER] Defining a new atom type (metal)
- Pengfei Li (Thu Nov 18 2021 - 08:19:50 PST)
- Sam Walsworth (Researcher) (Thu Nov 04 2021 - 08:12:23 PDT)
[AMBER] different performance with and without distance restraints in TI calculation
- Qinghua Liao (Mon Nov 29 2021 - 05:07:36 PST)
[AMBER] Does minimization require for average pdb structure extract from 2drms plot using CPPTRAJ AMBER 16
- Daniel Roe (Thu Nov 11 2021 - 06:18:16 PST)
[AMBER] duplicate simulations problem
- Sadaf Rani (Wed Nov 24 2021 - 22:04:16 PST)
- David A Case (Wed Nov 24 2021 - 12:34:23 PST)
- Sadaf Rani (Wed Nov 24 2021 - 11:08:38 PST)
- David A Case (Wed Nov 24 2021 - 05:34:36 PST)
- Sadaf Rani (Wed Nov 24 2021 - 02:07:37 PST)
[AMBER] Dynamic cross correlation matrices in AMBER20
- Matias Machado (Wed Nov 17 2021 - 12:53:51 PST)
- Debarati DasGupta (Wed Nov 17 2021 - 08:50:00 PST)
[AMBER] Electrostatic energy in a simple non-periodic system
- David A Case (Wed Nov 17 2021 - 06:20:03 PST)
- Ali Morshedi (Wed Nov 17 2021 - 00:53:31 PST)
[AMBER] end state in TI calculations with pmemd.cuda
- Qinghua Liao (Thu Nov 04 2021 - 08:21:09 PDT)
[AMBER] Entropy by quasi harmonic approximations on multiple CPU
- ABDUL BASIT (Tue Nov 16 2021 - 20:49:59 PST)
[AMBER] Equilibrate and Production Run Membrane-protein complex
- King Wu (Wed Nov 24 2021 - 17:15:40 PST)
[AMBER] Error running metalpdb2mol2
- Pengfei Li (Wed Nov 17 2021 - 17:03:30 PST)
- Sam Walsworth (Researcher) (Wed Nov 10 2021 - 03:45:36 PST)
[AMBER] Error upon start of nfe-abmd
- Rafał Madaj (Fri Nov 05 2021 - 01:15:14 PDT)
- Feng Pan (Thu Nov 04 2021 - 08:44:52 PDT)
- Rafał Madaj (Tue Nov 02 2021 - 04:03:53 PDT)
[AMBER] Error: an illegal memory access was encountered launching kernel kClearForces
- Umesh Roy (Sun Oct 31 2021 - 23:40:59 PDT)
[AMBER] Error: In _MMPBSA_complex.mdcrd.0, expect only 3 or 6 box coords, got 5
- Akinyemi Omoniyi (Sat Nov 20 2021 - 16:47:45 PST)
[AMBER] Functional error
- David A Case (Tue Nov 16 2021 - 05:12:00 PST)
- Dr. Anselm Horn (Tue Nov 16 2021 - 01:25:34 PST)
- Archana (Mon Nov 15 2021 - 21:31:40 PST)
- David A Case (Mon Nov 15 2021 - 04:38:44 PST)
- Archana (Sun Nov 14 2021 - 22:49:24 PST)
[AMBER] Fwd: Constant pH MD simulation
- David A Case (Wed Nov 10 2021 - 11:54:40 PST)
- Divya Rai (Wed Nov 10 2021 - 04:35:19 PST)
- Jason Swails (Mon Nov 01 2021 - 07:09:20 PDT)
[AMBER] GIST: Entropy calculations
- Umesh Roy (Mon Nov 15 2021 - 02:19:32 PST)
[AMBER] help, we are frequently face this error
- David A Case (Mon Nov 15 2021 - 12:37:02 PST)
- zeinab masoomi (Mon Nov 15 2021 - 11:22:24 PST)
- David A Case (Mon Nov 15 2021 - 04:43:31 PST)
- zeinab masoomi (Mon Nov 15 2021 - 01:22:17 PST)
[AMBER] How to add an amidated residue at the C-terminal in AMBER tleap ?
- Yen Nguyen (Thu Nov 18 2021 - 12:49:27 PST)
- Carlos Simmerling (Thu Nov 18 2021 - 12:33:08 PST)
- Yen Nguyen (Thu Nov 18 2021 - 12:26:56 PST)
- Carlos Simmerling (Thu Nov 18 2021 - 11:55:32 PST)
- Yen Nguyen (Thu Nov 18 2021 - 11:47:43 PST)
[AMBER] How to change a Histidine protonation state
- Dr. Anselm Horn (Tue Nov 09 2021 - 02:39:23 PST)
- Sadaf Rani (Tue Nov 09 2021 - 02:05:16 PST)
[AMBER] How to Compare RDFs for different systems
- Thomas Cheatham (Mon Nov 01 2021 - 21:33:01 PDT)
[AMBER] How to create a MOH box (only methanol molecules)
- Alan (Thu Nov 25 2021 - 02:53:23 PST)
- Carlos Simmerling (Mon Nov 22 2021 - 13:39:48 PST)
- Alan (Mon Nov 22 2021 - 08:03:54 PST)
- David A Case (Fri Nov 19 2021 - 04:45:36 PST)
- Alan (Thu Nov 18 2021 - 14:17:43 PST)
[AMBER] How to generate mol2 file with topology and crd file?
- Eugene huh (Wed Nov 10 2021 - 01:25:17 PST)
[AMBER] How to generate only CA (alpha) atoms trajectory in cpptraj Amber
- Md Fulbabu Sk (Tue Nov 09 2021 - 08:54:03 PST)
- Daniel Roe (Tue Nov 09 2021 - 08:21:53 PST)
- Carlos Simmerling (Tue Nov 09 2021 - 08:09:54 PST)
- Md Fulbabu Sk (Tue Nov 09 2021 - 08:04:50 PST)
[AMBER] How to generate the .mol2 and .frcmod files for a carbohydrate with GLYCAM06 atom types in Antechamber
- David A Case (Sun Nov 07 2021 - 04:56:40 PST)
- Bhat Zahoor (Sun Nov 07 2021 - 01:48:23 PST)
[AMBER] How to gradually release the Cartesian restraint?
- Mohamed Aboelnga (Tue Nov 02 2021 - 11:49:30 PDT)
- Heng Cao (Tue Nov 02 2021 - 09:59:09 PDT)
[AMBER] How to interpret clustering
- Sadaf Rani (Fri Nov 26 2021 - 08:16:21 PST)
[AMBER] Hydrogen Mass Repartitioning without ParmEd
- ABEL Stephane (Tue Nov 09 2021 - 09:35:16 PST)
- Jason Swails (Tue Nov 09 2021 - 08:46:31 PST)
- ABEL Stephane (Tue Nov 09 2021 - 07:40:33 PST)
- ABEL Stephane (Tue Nov 09 2021 - 07:21:19 PST)
- Alyemni, Saleh (Tue Nov 09 2021 - 07:06:30 PST)
- Jason Swails (Tue Nov 09 2021 - 06:35:36 PST)
- ABEL Stephane (Tue Nov 09 2021 - 05:49:40 PST)
[AMBER] INFO Steered Molecular Dynamics
- Francesca Di Matteo - francesca.dimatteo5.studio.unibo.it (Thu Nov 11 2021 - 07:12:04 PST)
[AMBER] Inquiry on CPPTRAJ
- Daniel Roe (Wed Nov 03 2021 - 06:28:36 PDT)
- Razil Tahir (Tue Nov 02 2021 - 21:13:02 PDT)
[AMBER] installation error amber 18 in ubuntu 20.04
- Ayesha Fatima (Fri Nov 26 2021 - 01:51:42 PST)
- Ayesha Fatima (Fri Nov 26 2021 - 00:27:19 PST)
- David A Case (Thu Nov 25 2021 - 17:41:05 PST)
- Ayesha Fatima (Thu Nov 25 2021 - 06:19:25 PST)
- David A Case (Thu Nov 25 2021 - 06:08:35 PST)
- Ayesha Fatima (Wed Nov 24 2021 - 23:34:52 PST)
- David A Case (Wed Nov 24 2021 - 05:47:33 PST)
- Ayesha Fatima (Wed Nov 24 2021 - 01:06:09 PST)
[AMBER] Installation question
- Jason Swails (Mon Nov 08 2021 - 05:59:34 PST)
- Michael Goldstein (Mon Nov 01 2021 - 11:28:18 PDT)
[AMBER] Interesting findings regarding water density, ntf values, and total potential energy
- Matias Machado (Tue Nov 23 2021 - 14:06:10 PST)
- Liao (Tue Nov 23 2021 - 13:38:13 PST)
- David A Case (Tue Nov 23 2021 - 13:35:30 PST)
- Liao (Tue Nov 23 2021 - 12:39:36 PST)
- David A Case (Tue Nov 23 2021 - 12:07:15 PST)
- Liao (Tue Nov 23 2021 - 09:04:57 PST)
- David A Case (Tue Nov 23 2021 - 06:03:17 PST)
- Liao (Tue Nov 23 2021 - 00:23:35 PST)
[AMBER] Interpolated Corrections
- Pedro Miguel Reis Figueiredo (Tue Nov 30 2021 - 05:51:53 PST)
- Pedro Miguel Reis Figueiredo (Mon Nov 29 2021 - 05:59:58 PST)
[AMBER] ion concentration 150mM NaCl in
- King Wu (Thu Nov 11 2021 - 07:40:41 PST)
- Carlos Simmerling (Thu Nov 11 2021 - 02:32:11 PST)
- Ben Roberts (Wed Nov 10 2021 - 22:30:15 PST)
- King Wu (Wed Nov 10 2021 - 22:11:50 PST)
[AMBER] Is there a polarizable counterpart to FF99sb?
- Matthew Guberman-Pfeffer (Mon Nov 01 2021 - 10:26:00 PDT)
[AMBER] Isopeptide bond parameterization
- Dr. Anselm Horn (Thu Nov 11 2021 - 07:32:21 PST)
- Venkatareddy Dadireddy (Thu Nov 11 2021 - 05:51:34 PST)
[AMBER] Ligand breaks during system preparation
- David A Case (Sat Nov 06 2021 - 06:29:38 PDT)
- Ch Bilal (Sat Nov 06 2021 - 00:02:48 PDT)
[AMBER] Lipid17 PGR vs PGS
- Baker, Joseph (Wed Nov 24 2021 - 09:01:19 PST)
[AMBER] MMGBSA error mitigation
- Debarati DasGupta (Sun Nov 14 2021 - 05:13:37 PST)
- David A Case (Sat Nov 13 2021 - 18:52:02 PST)
- zmatovic.kg.ac.rs (Sat Nov 13 2021 - 15:37:55 PST)
- Debarati DasGupta (Sat Nov 13 2021 - 15:21:05 PST)
- Debarati DasGupta (Sat Nov 13 2021 - 14:53:36 PST)
- David A Case (Sat Nov 13 2021 - 05:42:25 PST)
- Debarati DasGupta (Sat Nov 13 2021 - 05:16:03 PST)
[AMBER] Multiple Replicate Trajectories
- Adrian Roitberg (Wed Nov 03 2021 - 08:53:57 PDT)
- David A Case (Wed Nov 03 2021 - 08:52:16 PDT)
- Adrian Roitberg (Wed Nov 03 2021 - 06:46:53 PDT)
- Li,Haoxi (Wed Nov 03 2021 - 06:40:50 PDT)
[AMBER] Mutation of R to Histidine
- mohamed marzouk (Fri Nov 26 2021 - 16:18:53 PST)
- Dr. Anselm Horn (Fri Nov 26 2021 - 10:01:47 PST)
- mohamed marzouk (Fri Nov 26 2021 - 09:09:00 PST)
- Dr. Anselm Horn (Fri Nov 26 2021 - 09:02:14 PST)
- mohamed marzouk (Fri Nov 26 2021 - 08:41:15 PST)
- mohamed marzouk (Fri Nov 26 2021 - 08:39:36 PST)
- Dr. Anselm Horn (Fri Nov 26 2021 - 08:34:05 PST)
- mohamed marzouk (Fri Nov 26 2021 - 08:13:07 PST)
[AMBER] NVT or NPT in aMD simulations?
- Michael Shokhen (Tue Nov 02 2021 - 02:15:51 PDT)
[AMBER] open mpi compiler error
- David A Case (Tue Nov 30 2021 - 12:55:13 PST)
- Ayesha Fatima (Tue Nov 30 2021 - 09:35:53 PST)
- David A Case (Tue Nov 30 2021 - 05:46:14 PST)
- Ayesha Fatima (Mon Nov 29 2021 - 23:50:38 PST)
[AMBER] Parameterize small molecules with CGenFF in Amber
- Pengfei Li (Wed Nov 17 2021 - 17:06:43 PST)
- He, Amy (Wed Nov 17 2021 - 11:56:58 PST)
[AMBER] parametrization with fixed charges on some atoms
- Dr. Anselm Horn (Wed Nov 17 2021 - 00:47:25 PST)
- Reza Esmaeeli (Tue Nov 16 2021 - 16:03:24 PST)
[AMBER] ParmEd error
- Sangeetha B (Tue Nov 09 2021 - 02:43:57 PST)
- Jason Swails (Mon Nov 08 2021 - 05:58:24 PST)
- Sangeetha B (Sat Nov 06 2021 - 03:33:32 PDT)
- Jason Swails (Fri Nov 05 2021 - 14:10:50 PDT)
- Sangeetha B (Fri Nov 05 2021 - 06:49:05 PDT)
- Sangeetha B (Fri Nov 05 2021 - 06:43:09 PDT)
- Jason Swails (Fri Nov 05 2021 - 06:15:58 PDT)
- Sangeetha B (Wed Nov 03 2021 - 04:39:22 PDT)
[AMBER] ParmEd: tiMerge error with ff19SB CMAP term
- Ali Morshedi (Thu Nov 18 2021 - 01:06:54 PST)
[AMBER] Partial frame/traj dump during MD run.
- Dr. Anselm Horn (Mon Nov 29 2021 - 03:18:01 PST)
- Pedro Guillem (Mon Nov 29 2021 - 02:52:14 PST)
[AMBER] Post-doc opportunity
- Pratul Agarwal (Fri Nov 12 2021 - 10:48:27 PST)
[AMBER] Preparing/generating input files for Amber MD
- Carlos Simmerling (Mon Nov 01 2021 - 12:50:48 PDT)
- Jhuma Das (Mon Nov 01 2021 - 12:32:09 PDT)
[AMBER] Problem measuring angle in CPPTRAJ
- Matthew Guberman-Pfeffer (Tue Nov 02 2021 - 19:16:12 PDT)
- Daniel Roe (Mon Nov 01 2021 - 07:05:01 PDT)
[AMBER] problems with FEP calculations
- Małgorzata Kogut (Mon Nov 22 2021 - 06:45:25 PST)
[AMBER] Problems with RMSD of different proteins.
- Seibold, Steve Allan (Mon Nov 29 2021 - 08:15:03 PST)
- Carlos Simmerling (Mon Nov 29 2021 - 08:07:03 PST)
- Seibold, Steve Allan (Sun Nov 28 2021 - 07:47:10 PST)
[AMBER] Protein in mixed of solvents
- Damiano Spadoni (Wed Nov 24 2021 - 04:36:07 PST)
- Damiano Spadoni (Tue Nov 23 2021 - 12:26:45 PST)
[AMBER] question of Amber calculate RMSF
- Dr. Anselm Horn (Sun Nov 07 2021 - 13:57:58 PST)
- 吴晓东 (Sun Nov 07 2021 - 00:45:55 PDT)
[AMBER] Question of Amber_ Sasaki
- David A Case (Tue Nov 02 2021 - 05:26:01 PDT)
- Shiho Ohno (Mon Nov 01 2021 - 21:57:12 PDT)
[AMBER] Regarding setting up MMGBSA calculation
- Debarati DasGupta (Fri Nov 12 2021 - 04:18:24 PST)
[AMBER] Regarding two stage resp fittings (Using Gaussian 09 output)
- Rajarshi Roy (Mon Nov 29 2021 - 06:59:51 PST)
[AMBER] Restraint-like bonds using ParmEd setBond?
- Brian Radak (Tue Nov 02 2021 - 19:53:06 PDT)
- Jason Swails (Tue Nov 02 2021 - 13:52:09 PDT)
- Brian Radak (Mon Nov 01 2021 - 11:32:29 PDT)
[AMBER] RMSD of different protein PDBs
- Seibold, Steve Allan (Sat Nov 27 2021 - 15:01:50 PST)
[AMBER] Running Simulations in a Vacuum
- Carlos Simmerling (Mon Nov 15 2021 - 12:54:19 PST)
- Juliette Newell (Mon Nov 15 2021 - 03:42:43 PST)
- Carlos Simmerling (Mon Nov 15 2021 - 03:18:33 PST)
- Juliette Newell (Mon Nov 15 2021 - 03:16:19 PST)
- Carlos Simmerling (Fri Nov 12 2021 - 06:32:48 PST)
- Juliette Newell (Fri Nov 12 2021 - 04:39:54 PST)
- Carlos Simmerling (Fri Nov 12 2021 - 04:37:55 PST)
- Juliette Newell (Fri Nov 12 2021 - 04:33:51 PST)
[AMBER] S-adenosyl-L-methionine (SAM) ff parameters
- Venkatareddy Dadireddy (Fri Nov 19 2021 - 12:08:26 PST)
- Dr. Anselm Horn (Fri Nov 19 2021 - 03:16:12 PST)
- Venkatareddy Dadireddy (Thu Nov 18 2021 - 22:07:45 PST)
- Dr. Anselm Horn (Thu Nov 18 2021 - 00:08:14 PST)
- Venkatareddy Dadireddy (Fri Nov 12 2021 - 20:53:39 PST)
[AMBER] scientific issue
- Josh Berryman (Wed Nov 10 2021 - 08:17:21 PST)
- David A Case (Wed Nov 10 2021 - 08:04:48 PST)
- SOMA ROY (Wed Nov 10 2021 - 07:11:21 PST)
[AMBER] SelectionError: Invalid selection. Illegal residue range
- Nousheen (Fri Nov 19 2021 - 02:06:00 PST)
[AMBER] Summit compile and "Attempted to read inpcrd as a NetCDF restart file, but failed"
- Derek M Shore (Mon Nov 22 2021 - 16:53:53 PST)
- David A Case (Sat Nov 20 2021 - 06:03:06 PST)
- Derek M Shore (Fri Nov 19 2021 - 15:56:21 PST)
[AMBER] tleap problem
- Debarati DasGupta (Thu Nov 11 2021 - 17:18:05 PST)
- Matias Machado (Thu Nov 11 2021 - 15:17:04 PST)
- Debarati DasGupta (Thu Nov 11 2021 - 13:11:51 PST)
[AMBER] Unable to correctly identify element EPW
- Sai Kumar Ramadugu (Thu Nov 11 2021 - 14:48:35 PST)
- Sai Kumar Ramadugu (Tue Nov 09 2021 - 11:14:22 PST)
[AMBER] Using mmpbsa_py_nabnmode directly
- Liao (Sun Nov 14 2021 - 21:25:01 PST)
- Liao (Sun Nov 14 2021 - 12:29:43 PST)
[AMBER] Using predefined Ag+ parameters
- Sam Walsworth (Researcher) (Tue Nov 30 2021 - 05:48:02 PST)
[AMBER] Using RESP charges in antechamber
- Dr. Anselm Horn (Wed Nov 10 2021 - 03:23:01 PST)
- Karl Kirschner (Tue Nov 09 2021 - 23:52:22 PST)
- Sam Walsworth (Researcher) (Tue Nov 09 2021 - 08:43:17 PST)
[AMBER] Warnings for sp2 for two improper dihedrals
- ABEL Stephane (Wed Nov 10 2021 - 08:07:23 PST)
- David A Case (Wed Nov 10 2021 - 07:56:38 PST)
- ABEL Stephane (Wed Nov 10 2021 - 06:07:02 PST)
[AMBER] water box corrupted by minimization
- Michael Shokhen (Sat Nov 06 2021 - 09:18:28 PDT)
- Nagar, Hemant (Fri Nov 05 2021 - 07:26:33 PDT)
- David A Case (Fri Nov 05 2021 - 06:30:00 PDT)
- Michael Shokhen (Thu Nov 04 2021 - 10:07:41 PDT)
[AMBER] What ion parameters can be used with non-water solvents?
- Pengfei Li (Wed Nov 17 2021 - 16:59:01 PST)
- David A Case (Sat Nov 13 2021 - 05:37:05 PST)
- Matthew Guberman-Pfeffer (Fri Nov 12 2021 - 23:42:05 PST)
[AMBER] when SLEAP got dropped?
- Alan (Mon Nov 15 2021 - 08:08:59 PST)
- David A Case (Mon Nov 15 2021 - 04:33:26 PST)
- Alan (Sun Nov 14 2021 - 10:51:28 PST)
[AMBER] xLEaP Keyboard?
- David A Case (Sat Nov 20 2021 - 05:43:51 PST)
- Brandon Orzolek (Fri Nov 19 2021 - 12:02:28 PST)
[AMBER] 【MCPB】 Why is the wrong file generated in tleap.in
- Pengfei Li (Thu Nov 18 2021 - 08:11:38 PST)
- Huimin Tian (Mon Nov 08 2021 - 03:02:17 PST)
- Huimin Tian (Mon Nov 08 2021 - 02:04:08 PST)
- Huimin Tian (Mon Nov 08 2021 - 00:36:23 PST)
[AMBER] 【tleap】 How to add water(TIP3P) to the right place in the protein？
- Alan (Tue Nov 30 2021 - 01:31:39 PST)
- Carlos Simmerling (Mon Nov 29 2021 - 02:38:35 PST)
- Huimin Tian (Sun Nov 28 2021 - 18:29:57 PST)

Amber Archive Nov 2021 by subject