Re: [AMBER] help, we are frequently face this error

From: David A Case <>
Date: Mon, 15 Nov 2021 07:43:31 -0500

On Mon, Nov 15, 2021, zeinab masoomi wrote:

>we are facing this error and don't know why. may you please help us? the
>commands are pasted below.

gp0= loadpdb structure_AMBER.pdb

We would need to know what is in this pdb file, and how you created it.
It looks like you are trying to model a carbohydrate, and the program is
failing to find parameters between a terminal OH and the main sugar:

>Could not find bond parameter for: OH - Cg

Maybe that will provide a clue.


AMBER mailing list
Received on Mon Nov 15 2021 - 05:00:03 PST
Custom Search