thank you for your response
a structure is attached below, it's SARS-CoV-2 RBD glycosylated by glycam
server.
what is wrong there?
On Mon, 15 Nov 2021 at 16:13, David A Case <david.case.rutgers.edu> wrote:
> On Mon, Nov 15, 2021, zeinab masoomi wrote:
>
> >we are facing this error and don't know why. may you please help us? the
> >commands are pasted below.
>
> gp0= loadpdb structure_AMBER.pdb
>
> We would need to know what is in this pdb file, and how you created it.
> It looks like you are trying to model a carbohydrate, and the program is
> failing to find parameters between a terminal OH and the main sugar:
>
> >Could not find bond parameter for: OH - Cg
>
> Maybe that will provide a clue.
>
> ....dac
>
>
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Received on Mon Nov 15 2021 - 11:30:02 PST
