Amber Archive Nov 2021: by messages with attachments

[AMBER] Error upon start of nfe-abmd Rafał Madaj (Tue Nov 02 2021 - 04:03:53 PDT)
1. tmd.in (431 bytes)
2. cv_def.in (200 bytes)
3. cv.in (189 bytes)
[AMBER] water box corrupted by minimization Michael Shokhen (Thu Nov 04 2021 - 10:07:41 PDT)
1. image.png (337274 bytes)
[AMBER] antechamber use for two unit ligand Rana Rehan Khalid (Fri Nov 05 2021 - 13:30:08 PDT)
1. ligand.mol2 (4797 bytes)
[AMBER] Ligand breaks during system preparation Ch Bilal (Sat Nov 06 2021 - 00:02:48 PDT)
1. SysPrepScript.sh (1195 bytes)
Re: [AMBER] water box corrupted by minimization Michael Shokhen (Sat Nov 06 2021 - 09:18:28 PDT)
1. image.png (292940 bytes)
[AMBER] Cellulose-COOH modification Arash Elahi (Mon Nov 08 2021 - 19:57:11 PST)
1. image.png (26750 bytes)
[AMBER] Cellulose-COOH modification Arash Elahi (Tue Nov 09 2021 - 11:41:21 PST)
1. image.png (26750 bytes)
[AMBER] Isopeptide bond parameterization Venkatareddy Dadireddy (Thu Nov 11 2021 - 05:51:34 PST)
1. ISP_scheme.png (473797 bytes)
[AMBER] S-adenosyl-L-methionine (SAM) ff parameters Venkatareddy Dadireddy (Fri Nov 12 2021 - 20:53:39 PST)
1. 10822_2015_9864_MOESM2_ESM.pdb (28771 bytes)
2. 10822_2015_9864_MOESM3_ESM.itp (36007 bytes)
[AMBER] MMGBSA error mitigation Debarati DasGupta (Sat Nov 13 2021 - 05:16:03 PST)
1. 6AB3237041074030979B29D684873941.png (190276 bytes)
Re: [AMBER] MMGBSA error mitigation Debarati DasGupta (Sun Nov 14 2021 - 05:13:37 PST)
1. FF40410974FA4013AB57B714664256F5.png (144 bytes)
Re: [AMBER] help, we are frequently face this error zeinab masoomi (Mon Nov 15 2021 - 11:22:24 PST)
1. structure_AMBER__1_.pdb (288275 bytes)
[AMBER] Electrostatic energy in a simple non-periodic system Ali Morshedi (Wed Nov 17 2021 - 00:53:31 PST)
1. single.rst7 (157 bytes)
2. single.parm7 (8208 bytes)
3. md.out (9323 bytes)
4. run.sh (246 bytes)
Re: [AMBER] S-adenosyl-L-methionine (SAM) ff parameters Venkatareddy Dadireddy (Thu Nov 18 2021 - 22:07:45 PST)
1. Saez2015.frcmod (2537 bytes)
2. Saez2015_mod1.frcmod (2621 bytes)
Re: [AMBER] Summit compile and "Attempted to read inpcrd as a NetCDF restart file, but failed" Derek M Shore (Mon Nov 22 2021 - 16:53:53 PST)
1. inpcrd (425428 bytes)
[AMBER] Available postdoctoral position Reza Khayat (Tue Nov 23 2021 - 11:12:43 PST)
1. 23-11.pdf (111646 bytes)
Re: [AMBER] installation error amber 18 in ubuntu 20.04 Ayesha Fatima (Wed Nov 24 2021 - 23:34:52 PST)
1. make.log1 (233276 bytes)
Re: [AMBER] installation error amber 18 in ubuntu 20.04 Ayesha Fatima (Fri Nov 26 2021 - 00:27:19 PST)
1. Makefile (16428 bytes)
2. outer (4141 bytes)
[AMBER] How to interpret clustering Sadaf Rani (Fri Nov 26 2021 - 08:16:21 PST)
1. cpopvtime.png (184334 bytes)
2. cnumvtime.dat (44022 bytes)

Amber Archive Nov 2021 by messages with attachments