Dear Prof,
Thank you once again. I tried once more by blocking all lines with
packmol-memgen. I am attaching my make file from Amberools/src. Now the
error is different
///// These are the last few lines
(cd nfe-umbrella-slice && make install)
make[2]: Entering directory
'/home/aesha/Documents/amber18/amber18/AmberTools/src/nfe-umbrella-slice'
g++ -fPIC -o nfe-umbrella-slice umbrella.o dimension.o utils.o main.o
/home/aesha/Documents/amber18/amber18//lib/libnetcdf.a
mv nfe-umbrella-slice /home/aesha/Documents/amber18/amber18//bin
make[2]: Leaving directory
'/home/aesha/Documents/amber18/amber18/AmberTools/src/nfe-umbrella-slice'
(if [ "no" = "no" ]; then \
make python_serial ;\
fi;\
)
make[2]: Entering directory
'/home/aesha/Documents/amber18/amber18/AmberTools/src'
make[2]: *** No rule to make target 'python_serial'. Stop.
make[2]: Leaving directory
'/home/aesha/Documents/amber18/amber18/AmberTools/src'
make[1]: *** [Makefile:56: serial] Error 2
make[1]: Leaving directory
'/home/aesha/Documents/amber18/amber18/AmberTools/src'
make: *** [Makefile:7: install] Error 2
/////
I hope some solution will be found soon.
I commented out the packmol-memgen in the Makefile-outer in the main or
outer amber folder also. attaching that file too.
Thank you again
On Fri, Nov 26, 2021 at 4:41 AM David A Case <david.case.rutgers.edu> wrote:
> On Thu, Nov 25, 2021, Ayesha Fatima wrote:
>
> >Yes Unfortunately it does not show the error but the error is persisting
> >even after commenting the line as earlier advised in the make file. has it
> >got to do with the incompatibility of Ubuntu 20 and Amber 18?
>
> I doubt that there is a fundamental inconsistency. I'm sure I have built
> Amber18 on Ubuntu20, but I don't have details.
>
> Have you commented out every reference to packmol_memgen in the Makefile?
> Maybe having someone else look at the log file would help explain why the
> packmol_memgen error still arises.
>
> >Yes we are thinking of it and are looking for grant support.
>
> Just note that AmberTools21 does not have a license fee.
>
> ....dac
>
>
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>
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- application/octet-stream attachment: Makefile
Received on Fri Nov 26 2021 - 00:30:02 PST
