Re: [AMBER] How to generate the .mol2 and .frcmod files for a carbohydrate with GLYCAM06 atom types in Antechamber

From: David A Case <david.case.rutgers.edu>
Date: Sun, 7 Nov 2021 07:56:40 -0500

On Sun, Nov 07, 2021, Bhat Zahoor wrote:
>
>Now, I want to generate the .mol2 and .frcmod files for this ligand having
>GLYCAM_06j-1 atom types and partial charges but I have not got any clue how
>to do it. Any help would be appreciated.

This material is covered in Section 3.3 of the Reference Manual. The glycam
web site (glycam.org) might also be of help, although what you probably want
most (the "pdb preprocessor") is not yet available.

....dac


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Received on Sun Nov 07 2021 - 05:00:01 PST
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