Re: [AMBER] How to generate the .mol2 and .frcmod files for a carbohydrate with GLYCAM06 atom types in Antechamber

From: David A Case <>
Date: Sun, 7 Nov 2021 07:56:40 -0500

On Sun, Nov 07, 2021, Bhat Zahoor wrote:
>Now, I want to generate the .mol2 and .frcmod files for this ligand having
>GLYCAM_06j-1 atom types and partial charges but I have not got any clue how
>to do it. Any help would be appreciated.

This material is covered in Section 3.3 of the Reference Manual. The glycam
web site ( might also be of help, although what you probably want
most (the "pdb preprocessor") is not yet available.


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Received on Sun Nov 07 2021 - 05:00:01 PST
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