Hello experts!
I'm currently in the stage of analyzing lipid bilayer MD simulation using CPPTRAJ packages in Amber. I have a few questions.
Firstly, I'm using periodic boundary condition. So, can I study interaction between atoms in different cells? For example, the hydrogen bonds between the primary cell and its adjacent cells?
Secondly, I want to plot local density profile. Can I group a few atoms together? For example, I need one plot for the lipid head and another one for the tail? I looked in the tutorial but I can find it.
Thank you in advance! I really appreciate your response!!
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Received on Tue Nov 02 2021 - 21:30:02 PDT
