Amber Archive Nov 2022 by subject
- [AMBER] about mmgbsa method
- [AMBER] Alchemical gti keyword questions
- [AMBER] amber tools2016
- [AMBER] AMBER-TI running error
- [AMBER] AMBER20 GPU error
- [AMBER] Amber22 GPU installation fails while building NVCC object `pmemd_xray_cuda_generated_BulkMaskGPU.cu.o`
- [AMBER] Announcement: Atomic Simulation Center Symposium 2022, Nov 28/29
- [AMBER] Antechamber and py_resp qout format
- [AMBER] Applying position restraint on ligand
- [AMBER] Autoimage cannot find topology information
- [AMBER] Changing CUDA toolkits - need recompile?
- [AMBER] compile AMBER 22 with non-default gcc
- [AMBER] Compiling Amber on Apple Silicon M2?
- [AMBER] counting number of ions within cutoff region
- [AMBER] Cpptraj for loops and dataset operations
- [AMBER] Detect vacuum bubbles
- [AMBER] Do RTX 3080Ti video cards supported by the amber20?
- [AMBER] Error - Amber 22 Installation with Cuda
- [AMBER] Extract all frame from a nc file using cpptraj
- [AMBER] Force filed for non-specific residue CAS
- [AMBER] Free Energy Calculation using TI
- [AMBER] Fwd: Aluminum parameters, URGENT
- [AMBER] Generating parameters for unnatural amino acids
- [AMBER] Generation of CPIN in CpHMD simulations
- [AMBER] gmx_MMPBSA installation error
- [AMBER] gmx_MMPBSA installation error please help
- [AMBER] Gradual heating: Linear response pressure?
- [AMBER] gti_cut vs. gti_cut_sc
- [AMBER] How to use MCPB.py to deal with the oxygen atom Fe=O of CpdⅠ
- [AMBER] Inconsistent GPU Results
- [AMBER] installation
- [AMBER] Installation of amber18 (MPI version) with CPU and intel mpi
- [AMBER] Installation of amber18 on on parallel CPU
- [AMBER] Installation of Amber19
- [AMBER] Installation Problem
- [AMBER] Installation problem on amber18 with parallel CPU in linux
- [AMBER] Lambda-Scheduling, what is TypeGen?
- [AMBER] LJ parameters for AL3+
- [AMBER] MCPB.py (Error: the charges and atom numbers are mismatch)
- [AMBER] Messages not getting through to the Amber Mailing List?
- [AMBER] Metal center created with MCPB.py collapses on MD start?
- [AMBER] Missing GaMD restart file
- [AMBER] Missing parameters while Simulating a Zn containing protein in Amber
- [AMBER] MM/PBSA & MM/GBSA and three trajectories
- [AMBER] monovalent ions in methanol
- [AMBER] Only three atoms in water molecules instead of four
- [AMBER] OPC3-pol
- [AMBER] Position restraints in NPT
- [AMBER] Postdoc and PhD position at IPB Halle (Germany)
- [AMBER] Problem with topology file generation
- [AMBER] Query regarding AMBER tutorial
- [AMBER] Query regarding AMBER tutorial Replica Exchange
- [AMBER] Query regarding RMS in minimization of explicit solvent
- [AMBER] question on mmgbsa energy calculation
- [AMBER] Questions about reading the right LJ_Acoef values in *.prmtop file
- [AMBER] Questions about refinement of dihedral parameters by QM calculations
- [AMBER] Reimaging issues
- [AMBER] Restart and Topology Files Contain Different Numbers of Atoms
- [AMBER] Settings for CHAMM FF?
- [AMBER] Simulating a Protein - cyclic peptide complex - question
- [AMBER] Simulation of ssDNA folding
- [AMBER] Temperature drop while switching from NVT to NPT during equilibration
- [AMBER] test FAILURE in ired.vec.diff
- [AMBER] Testing suite for openMP
- [AMBER] the mmgbsa output
- [AMBER] TIP4P/Ice (2005) water model in AMBER?
- [AMBER] Trouble reproducing solvateOct output from Tutorial 1.4
- [AMBER] Unable to access xleap software!
- [AMBER] unbalanced usage of GPU cards in Replica Exchange MD
- [AMBER] Updates to mdinfo with amber 22
- [AMBER] Vacuum simulation problem
- [AMBER] What is the "right" number of unit cells for simulating protein crystals?
- [AMBER] {SPAM?} AMBER-TI running error
- [AMBER] {SPAM?} Force filed for non-specific residue CAS
- [AMBER] {SPAM?} Inconsistent GPU Results
- [AMBER] {SPAM?} scbeta, wrong default?
- [AMBER] 你好amber@ambermd.org
- Alchemical gti keyword questions
- Inconsistent GPU Results
- Installation Problem
- Vacuum simulation problem
- Last message date: Wed Nov 30 2022 - 15:00:02 PST
- Archived on: Wed Dec 04 2024 - 05:56:10 PST