Amber Archive Apr 2020: by subject

[AMBER] 1 chain-1chain interactions between carbohydrates
- Lachele Foley (Thu Apr 16 2020 - 01:20:50 PDT)
- Pinky Mazumder (Tue Apr 14 2020 - 20:36:31 PDT)
[AMBER] 12-6-4LJ for thermodynamic integration on PMEMD engine
- Song, Lin (Thu Apr 09 2020 - 08:34:22 PDT)
- Pengfei Li (Thu Apr 09 2020 - 08:22:55 PDT)
- Paulius Kantakevicius (Sat Apr 04 2020 - 12:01:13 PDT)
[AMBER] Abasic Site and Leap Polymerization
- Christina Bergonzo (Sun Apr 05 2020 - 12:43:27 PDT)
- Robert Molt (Sun Apr 05 2020 - 10:22:40 PDT)
- Christina Bergonzo (Sat Apr 04 2020 - 14:37:10 PDT)
- Robert Molt (Sat Apr 04 2020 - 13:01:13 PDT)
- Christina Bergonzo (Sat Apr 04 2020 - 09:42:11 PDT)
- Robert Molt (Sat Apr 04 2020 - 08:56:33 PDT)
[AMBER] Acetylated the truncated N- terminal
- Lod King (Thu Apr 09 2020 - 23:14:53 PDT)
- David Sáez (Thu Apr 09 2020 - 23:11:33 PDT)
- Abdul-Rashid III Sampaco (Thu Apr 09 2020 - 22:16:19 PDT)
- Lod King (Thu Apr 09 2020 - 22:10:03 PDT)
- David Sáez (Thu Apr 09 2020 - 22:02:24 PDT)
- Lod King (Thu Apr 09 2020 - 20:47:27 PDT)
[AMBER] adding hydrogen to pdbqt ligand files
- David A Case (Tue Apr 28 2020 - 16:40:40 PDT)
- Marawan Hussien (Tue Apr 28 2020 - 14:15:36 PDT)
[AMBER] AMBER 18 cuda installation
- ChenXingqiang (Sat Apr 11 2020 - 22:55:56 PDT)
- Ray Luo (Sat Apr 11 2020 - 09:59:12 PDT)
- ChenXingqiang (Sat Apr 11 2020 - 08:11:42 PDT)
[AMBER] AMBER 18 cuda installation: error: redefinition of ???simulationConst cSim???
- David Cerutti (Sat Apr 04 2020 - 20:54:23 PDT)
- Scott Brozell (Sat Apr 04 2020 - 18:09:42 PDT)
[AMBER] AMBER 18 cuda installation: error: redefinition of ‘simulationConst cSim’
- Sapna Shedge (Thu Apr 02 2020 - 10:58:23 PDT)
[AMBER] Amber force field for SDS and DPC detergents
- Ricky Nencini (Fri Apr 03 2020 - 10:06:29 PDT)
- ABEL Stephane (Fri Apr 03 2020 - 03:25:33 PDT)
- Ricky Nencini (Fri Apr 03 2020 - 03:17:27 PDT)
[AMBER] Amber install CUDA truble
- Sapna Shedge (Mon Apr 13 2020 - 17:55:02 PDT)
- ChenXingqiang (Sat Apr 11 2020 - 08:04:44 PDT)
[AMBER] AMBER leap issues constructing non-standard residue
- Siddharth marwaha (Mon Apr 27 2020 - 11:50:30 PDT)
[AMBER] Amber18 compiled with GCC/8.3.0 fails some DPFP tests
- Cong Liu (Tue Apr 14 2020 - 11:04:08 PDT)
- Kellon Belfon (Tue Apr 14 2020 - 10:36:48 PDT)
- Cong Liu (Tue Apr 14 2020 - 08:24:37 PDT)
- Cong Liu (Sat Apr 11 2020 - 07:25:07 PDT)
- David A Case (Sat Apr 11 2020 - 05:03:34 PDT)
- Cong Liu (Fri Apr 10 2020 - 16:52:16 PDT)
[AMBER] Amber18 PIMD tutorial
- Sapna Shedge (Sat Apr 18 2020 - 15:56:58 PDT)
- David A Case (Sat Apr 18 2020 - 05:53:07 PDT)
- Sapna Shedge (Fri Apr 17 2020 - 23:16:19 PDT)
[AMBER] Amber18, tools19, cuda 10.2
- Christopher Benjamin Coffey (Thu Apr 23 2020 - 08:13:06 PDT)
- accuratefreeenergy.gmail.com (Thu Apr 23 2020 - 06:56:44 PDT)
- David A Case (Thu Apr 23 2020 - 05:49:46 PDT)
- Christopher Benjamin Coffey (Wed Apr 22 2020 - 11:16:55 PDT)
[AMBER] Antechamber/acpype for ligand parametrization and usage of yasara autosmiles
- David A Case (Sun Apr 12 2020 - 05:49:59 PDT)
- Prasanth G, Research Scholar (Sat Apr 11 2020 - 10:37:10 PDT)
[AMBER] Can I use paramfit for MM scan?
- David Cerutti (Wed Apr 15 2020 - 14:44:04 PDT)
- Erdem Yeler (Wed Apr 15 2020 - 14:26:08 PDT)
- Erdem Yeler (Mon Apr 13 2020 - 04:37:52 PDT)
- David Cerutti (Sun Apr 12 2020 - 23:20:11 PDT)
- Erdem Yeler (Sat Apr 11 2020 - 21:35:13 PDT)
- David Cerutti (Sat Apr 11 2020 - 03:53:15 PDT)
- Elif Çiğdem Calvin (Fri Apr 10 2020 - 18:31:06 PDT)
[AMBER] cellulose chain
- Raman Preet Singh (Sun Apr 05 2020 - 10:30:40 PDT)
- David A Case (Sun Apr 05 2020 - 10:20:28 PDT)
- Pinky Mazumder (Thu Apr 02 2020 - 12:09:59 PDT)
[AMBER] Clustering analysis
- Debarati DasGupta (Wed Apr 15 2020 - 07:38:37 PDT)
[AMBER] command for building composite of cellulose microfibrils and hemicelullose
- Pinky Mazumder (Mon Apr 06 2020 - 15:05:16 PDT)
[AMBER] Contents of Amber Digest
- Pinky Mazumder (Sat Apr 04 2020 - 01:14:02 PDT)
[AMBER] CPPtraj PCA error
- Rana Rehan Khalid (Tue Apr 14 2020 - 11:36:24 PDT)
- Elvis Martis (Tue Apr 14 2020 - 11:18:39 PDT)
- Rana Rehan Khalid (Tue Apr 14 2020 - 10:57:54 PDT)
[AMBER] cylindrical Simulation
- mohamed marzouk (Tue Apr 28 2020 - 23:26:17 PDT)
- mohamed marzouk (Sun Apr 26 2020 - 18:47:12 PDT)
[AMBER] Differences in Lennard-Jones interactions in CPU vs GPU pmemd?
- David A Case (Sun Apr 05 2020 - 10:15:15 PDT)
[AMBER] DNA-RNA duplex
- Satyaseelan C (Mon Apr 27 2020 - 20:37:35 PDT)
- Sruthi Sudhakar (Sat Apr 25 2020 - 07:34:30 PDT)
[AMBER] Energy values from mdout (excluding solvent molecules)
- Eduardo R. Almeida (Mon Apr 20 2020 - 20:57:48 PDT)
[AMBER] Energy values from mdout files (excluding solvent molecules)
- Eduardo R. Almeida (Thu Apr 23 2020 - 06:01:19 PDT)
[AMBER] error tleap
- MYRIAN TORRES RICO (Tue Apr 28 2020 - 02:24:47 PDT)
[AMBER] Error when installing miniconda through AmberTools19
- Gardezi,Shahbaz (Thu Apr 16 2020 - 13:28:20 PDT)
- David A Case (Thu Apr 16 2020 - 12:02:25 PDT)
- Gardezi,Shahbaz (Thu Apr 16 2020 - 10:51:54 PDT)
- Abdul-Rashid III Sampaco (Thu Apr 16 2020 - 10:46:16 PDT)
- Gardezi,Shahbaz (Thu Apr 16 2020 - 10:40:06 PDT)
[AMBER] ERROR: Calculation halted. Periodic box dimensions have changed too much from their initial values.
- David A Case (Mon Apr 06 2020 - 05:03:59 PDT)
- Carlos Simmerling (Mon Apr 06 2020 - 03:52:38 PDT)
- Gallo, Angelo (Mon Apr 06 2020 - 02:12:26 PDT)
[AMBER] Error: Could not find angle parameter
- Rosellen, Martin (Fri Apr 03 2020 - 01:04:51 PDT)
[AMBER] examination of ligand binding energy as a function of simulation time with MMPBSA calculations
- Eugene.Billiot.tamucc.edu (Fri Apr 17 2020 - 11:54:15 PDT)
- Preeti Pandey (Fri Apr 17 2020 - 11:43:14 PDT)
- Eugene.Billiot.tamucc.edu (Fri Apr 17 2020 - 08:09:42 PDT)
- Ray Luo (Sun Apr 12 2020 - 19:33:47 PDT)
- Billiot, Eugene (Sat Apr 11 2020 - 07:48:27 PDT)
[AMBER] FATAL: allocation failure in ivector() error while running 3D-RISM calculations
- David A Case (Thu Apr 23 2020 - 05:54:19 PDT)
- Leena Aggarwal (Thu Apr 23 2020 - 04:32:16 PDT)
[AMBER] ff_amber_to_viparr.py Error
- David A Case (Sat Apr 04 2020 - 10:22:49 PDT)
- iraklis litinas (Sat Apr 04 2020 - 02:04:58 PDT)
[AMBER] Force Field for small molecule ligands
- Sruthi Sudhakar (Fri Apr 17 2020 - 06:06:07 PDT)
- Carlos Simmerling (Fri Apr 17 2020 - 05:20:29 PDT)
- Sruthi Sudhakar (Fri Apr 17 2020 - 05:17:35 PDT)
[AMBER] FRCMOD file
- Carlos Simmerling (Sat Apr 18 2020 - 07:26:57 PDT)
- Sruthi Sudhakar (Sat Apr 18 2020 - 07:01:46 PDT)
[AMBER] Fwd: FATAL: allocation failure in ivector() error while running 3D-RISM calculations
- Leena Aggarwal (Thu Apr 23 2020 - 11:25:47 PDT)
[AMBER] Generating an asymmetric box for Steered MD
- Souvik Dey (Fri Apr 17 2020 - 00:03:52 PDT)
- Souvik Dey (Thu Apr 16 2020 - 12:33:36 PDT)
- David A Case (Thu Apr 16 2020 - 04:54:56 PDT)
- Souvik Dey (Wed Apr 15 2020 - 15:43:01 PDT)
[AMBER] geometry of amino
- Song Hu (Mon Apr 13 2020 - 22:59:00 PDT)
[AMBER] Help for building lignin chain
- Carlos Simmerling (Wed Apr 15 2020 - 03:54:11 PDT)
- Pinky Mazumder (Tue Apr 14 2020 - 20:39:45 PDT)
- Karl Kirschner (Sat Apr 11 2020 - 01:23:49 PDT)
- Pinky Mazumder (Sat Apr 11 2020 - 00:21:32 PDT)
[AMBER] Help for the sequence of residue name
- Pinky Mazumder (Sun Apr 05 2020 - 00:09:15 PDT)
[AMBER] How to change charge value for 1 residue for MD simulation?
- David A Case (Thu Apr 23 2020 - 05:51:52 PDT)
- Devashish_Das (Thu Apr 23 2020 - 00:59:57 PDT)
[AMBER] How to get the eigenvalues from PCA
- SUNITA MUDULI (Mon Apr 27 2020 - 13:31:40 PDT)
[AMBER] implicit water
- Fabian Glaser (Wed Apr 22 2020 - 11:53:45 PDT)
[AMBER] ImportError: Could not import Amber Python modules
- David A Case (Thu Apr 09 2020 - 19:02:32 PDT)
- Renato Araujo (Thu Apr 09 2020 - 10:24:18 PDT)
[AMBER] Incorrect results when running MMPBSA example.
- Shum, Ho Hin (Thu Apr 02 2020 - 21:48:38 PDT)
[AMBER] Installation of ambertools on 32 bit linux system
- David A Case (Mon Apr 06 2020 - 05:00:59 PDT)
- Prasanth G, Research Scholar (Sun Apr 05 2020 - 22:12:12 PDT)
[AMBER] Installing nglview
- Hai Nguyen (Fri Apr 10 2020 - 17:45:08 PDT)
- Jatin Kashyap (Fri Apr 10 2020 - 17:30:48 PDT)
- Hai Nguyen (Fri Apr 10 2020 - 17:11:17 PDT)
- Jatin Kashyap (Thu Apr 09 2020 - 20:18:53 PDT)
[AMBER] integration algorithm of sander? And reference of sander?
- Erdem Yeler (Tue Apr 14 2020 - 12:56:50 PDT)
- David A Case (Mon Apr 13 2020 - 12:21:55 PDT)
- Erdem Yeler (Mon Apr 13 2020 - 10:45:26 PDT)
- Carlos Simmerling (Mon Apr 13 2020 - 10:27:20 PDT)
- Erdem Yeler (Mon Apr 13 2020 - 10:17:35 PDT)
- Carlos Simmerling (Mon Apr 13 2020 - 09:18:54 PDT)
- Erdem Yeler (Mon Apr 13 2020 - 09:12:12 PDT)
[AMBER] Interaction of cellulose-hemicellulose
- Lachele Foley (Wed Apr 29 2020 - 18:01:59 PDT)
- Dr. Anselm Horn (Mon Apr 27 2020 - 07:04:57 PDT)
- Pinky Mazumder (Sun Apr 26 2020 - 20:59:07 PDT)
- Lachele Foley (Fri Apr 24 2020 - 04:33:24 PDT)
- Pinky Mazumder (Fri Apr 24 2020 - 00:30:36 PDT)
- Pinky Mazumder (Mon Apr 20 2020 - 18:30:07 PDT)
- Lachele Foley (Sun Apr 19 2020 - 23:48:13 PDT)
- Pinky Mazumder (Sun Apr 19 2020 - 22:05:17 PDT)
- Lachele Foley (Sat Apr 18 2020 - 00:21:21 PDT)
- Pinky Mazumder (Fri Apr 17 2020 - 14:28:20 PDT)
- Pinky Mazumder (Fri Apr 17 2020 - 07:59:54 PDT)
- Pinky Mazumder (Fri Apr 17 2020 - 00:45:28 PDT)
- Lachele Foley (Thu Apr 16 2020 - 23:06:01 PDT)
- Pinky Mazumder (Thu Apr 16 2020 - 22:58:54 PDT)
- Lachele Foley (Thu Apr 16 2020 - 01:22:43 PDT)
- Pinky Mazumder (Wed Apr 15 2020 - 20:13:45 PDT)
[AMBER] Ligand leaving binding site at high lambdas using TI softcore
- Brian Radak (Sat Apr 11 2020 - 08:13:03 PDT)
- Juraj Dobias (Sat Apr 11 2020 - 02:22:55 PDT)
- Debarati DasGupta (Fri Apr 10 2020 - 08:46:19 PDT)
- Qinghua Liao (Fri Apr 10 2020 - 05:44:08 PDT)
- Debarati DasGupta (Fri Apr 10 2020 - 05:13:35 PDT)
- Juraj Dobias (Thu Apr 09 2020 - 13:34:11 PDT)
- Dickson, Callum (Thu Apr 09 2020 - 12:00:30 PDT)
- Juraj Dobias (Thu Apr 09 2020 - 10:30:07 PDT)
- Juraj Dobias (Wed Apr 08 2020 - 13:39:52 PDT)
[AMBER] Ligand lose planarity
- Jenny 148 (Sat Apr 25 2020 - 08:09:45 PDT)
[AMBER] miniconda3 AmberTools MMPBSA.py ERROR
- 15501908560.163.com> (Wed Apr 15 2020 - 19:06:02 PDT)
[AMBER] minimizing a pyridine in water
- Debarati DasGupta (Mon Apr 27 2020 - 11:53:48 PDT)
- James Kress (Sat Apr 25 2020 - 16:39:37 PDT)
- Debarati DasGupta (Sat Apr 25 2020 - 11:32:40 PDT)
- Debarati DasGupta (Sat Apr 25 2020 - 10:35:48 PDT)
- David A Case (Sat Apr 25 2020 - 10:29:12 PDT)
- Debarati DasGupta (Sat Apr 25 2020 - 08:38:29 PDT)
- Carlos Simmerling (Sat Apr 25 2020 - 06:18:38 PDT)
- Debarati DasGupta (Sat Apr 25 2020 - 06:10:52 PDT)
[AMBER] Mutations in existing DNA PDB file
- Jisha B (Thu Apr 30 2020 - 09:36:38 PDT)
[AMBER] NAB to create DNA/RNA hybrid?
- Satyaseelan C (Mon Apr 27 2020 - 20:38:27 PDT)
- David A Case (Mon Apr 27 2020 - 11:18:24 PDT)
- Jisha B (Sat Apr 25 2020 - 23:21:24 PDT)
[AMBER] nativecontacts
- Gustavo Seabra (Wed Apr 29 2020 - 05:56:19 PDT)
- mohamed marzouk (Tue Apr 28 2020 - 23:35:04 PDT)
[AMBER] nmode entropy calculations gets stuck way too often
- Liao (Sat Apr 11 2020 - 21:30:57 PDT)
- Liao (Sat Apr 04 2020 - 12:26:25 PDT)
- David A Case (Sat Apr 04 2020 - 10:30:24 PDT)
- Liao (Fri Apr 03 2020 - 18:44:22 PDT)
- Roitberg,Adrian E (Fri Apr 03 2020 - 16:55:14 PDT)
- Liao (Fri Apr 03 2020 - 16:42:58 PDT)
[AMBER] NPT equilibration is crashing
- Carlos Simmerling (Sun Apr 05 2020 - 04:41:13 PDT)
- Sunita Patel (Sat Apr 04 2020 - 19:53:31 PDT)
- Carlos Simmerling (Sat Apr 04 2020 - 11:30:29 PDT)
- Sunita Patel (Sat Apr 04 2020 - 11:22:13 PDT)
- David Sáez (Fri Apr 03 2020 - 18:56:44 PDT)
- Sunita Patel (Fri Apr 03 2020 - 18:23:34 PDT)
- Carlos Simmerling (Wed Apr 01 2020 - 10:01:49 PDT)
- Sunita Patel (Wed Apr 01 2020 - 09:41:43 PDT)
- David Sáez (Wed Apr 01 2020 - 06:44:25 PDT)
- Carlos Simmerling (Wed Apr 01 2020 - 06:14:04 PDT)
- Sunita Patel (Wed Apr 01 2020 - 05:45:40 PDT)
[AMBER] Partial charge for ligand
- Lod King (Fri Apr 10 2020 - 17:00:05 PDT)
[AMBER] peek_ewald_inpcrd: Box info not found in inpcrd
- Sunita Patel (Fri Apr 10 2020 - 19:49:08 PDT)
- David A Case (Thu Apr 09 2020 - 08:24:56 PDT)
- Sunita Patel (Thu Apr 09 2020 - 06:31:14 PDT)
- David A Case (Thu Apr 09 2020 - 04:47:22 PDT)
- Sunita Patel (Wed Apr 08 2020 - 21:01:18 PDT)
[AMBER] Penalty score in frcmod file
- Sruthi Sudhakar (Mon Apr 06 2020 - 23:24:47 PDT)
[AMBER] PrmtopError: Inconsistent charge definition for atom
- David A Case (Sun Apr 05 2020 - 18:06:14 PDT)
- DHEERAJ CHITARA (Sun Apr 05 2020 - 10:20:23 PDT)
[AMBER] Probable bug in tleap.
- Daniel Roe (Fri Apr 17 2020 - 11:47:42 PDT)
- Scott Brozell (Fri Apr 17 2020 - 11:46:17 PDT)
- Hector A. Baldoni (Fri Apr 17 2020 - 11:38:41 PDT)
[AMBER] Problem in calculating pairwise interaction with CPPTRAJ
- Prathit Chatterjee (Tue Apr 21 2020 - 02:47:42 PDT)
[AMBER] Problem in configuring
- David A Case (Thu Apr 02 2020 - 04:50:43 PDT)
- Sapna Shedge (Wed Apr 01 2020 - 21:34:48 PDT)
[AMBER] protein-protein complex dissociation
- Núbia Toman (Fri Apr 17 2020 - 01:50:34 PDT)
- Dr. Anselm Horn (Fri Apr 17 2020 - 01:10:00 PDT)
- David A Case (Thu Apr 16 2020 - 11:54:03 PDT)
- Núbia Toman (Thu Apr 16 2020 - 10:58:14 PDT)
- Carlos Simmerling (Thu Apr 16 2020 - 10:12:23 PDT)
- Núbia Toman (Thu Apr 16 2020 - 10:03:52 PDT)
- Carlos Simmerling (Thu Apr 16 2020 - 09:51:15 PDT)
- Núbia Toman (Thu Apr 16 2020 - 09:48:20 PDT)
- Carlos Simmerling (Thu Apr 16 2020 - 07:09:03 PDT)
- Núbia Toman (Thu Apr 16 2020 - 06:42:45 PDT)
- Núbia Toman (Thu Apr 16 2020 - 06:36:13 PDT)
- ABEL Stephane (Thu Apr 16 2020 - 06:31:34 PDT)
- Carlos Simmerling (Thu Apr 16 2020 - 06:21:13 PDT)
- Núbia Toman (Thu Apr 16 2020 - 06:17:53 PDT)
[AMBER] pyramidal amide nitrogen
- Arnaud Bondon (Thu Apr 02 2020 - 11:17:38 PDT)
[AMBER] pytraj error
- Ravi Abrol (Tue Apr 21 2020 - 14:21:36 PDT)
- Hai Nguyen (Tue Apr 21 2020 - 06:55:52 PDT)
- Ravi Abrol (Tue Apr 21 2020 - 04:02:03 PDT)
- Hai Nguyen (Mon Apr 20 2020 - 20:56:58 PDT)
- Ravi Abrol (Mon Apr 20 2020 - 14:03:47 PDT)
- David A Case (Mon Apr 20 2020 - 05:05:58 PDT)
- Ravi Abrol (Mon Apr 20 2020 - 00:06:35 PDT)
[AMBER] Question about PCA tutorial
- Abhilash J (Thu Apr 30 2020 - 16:03:54 PDT)
- Thomas Cheatham (Wed Apr 29 2020 - 20:24:07 PDT)
- Abhilash J (Wed Apr 29 2020 - 14:07:27 PDT)
[AMBER] questions about paramfit
- ttz (Thu Apr 09 2020 - 21:54:12 PDT)
[AMBER] Recurring problem: Ligand lose planarity
- Jenny 148 (Mon Apr 27 2020 - 11:51:53 PDT)
- David A Case (Mon Apr 27 2020 - 11:24:47 PDT)
- David A Case (Mon Apr 27 2020 - 11:23:18 PDT)
- Jenny 148 (Sun Apr 26 2020 - 14:15:22 PDT)
- Jenny 148 (Sun Apr 26 2020 - 11:28:39 PDT)
- Carlos Simmerling (Sun Apr 26 2020 - 11:24:05 PDT)
- Jenny 148 (Sun Apr 26 2020 - 11:04:32 PDT)
- Carlos Simmerling (Sun Apr 26 2020 - 10:23:54 PDT)
- Jenny 148 (Sun Apr 26 2020 - 09:33:51 PDT)
- Carlos Simmerling (Sun Apr 26 2020 - 08:49:49 PDT)
- Sruthi Sudhakar (Sun Apr 26 2020 - 08:33:44 PDT)
- Jenny 148 (Sat Apr 25 2020 - 21:49:45 PDT)
[AMBER] Reg:MMPB(GB)SA Error
- David A Case (Mon Apr 13 2020 - 12:16:12 PDT)
- Elvis Martis (Mon Apr 13 2020 - 11:58:21 PDT)
- Lara rajam (Mon Apr 13 2020 - 11:26:06 PDT)
[AMBER] Remove restraint
- David A Case (Wed Apr 01 2020 - 07:02:20 PDT)
- Ahmed Elrashedy (Wed Apr 01 2020 - 05:57:23 PDT)
- mohamed marzouk (Wed Apr 01 2020 - 05:50:33 PDT)
[AMBER] Request for help in solving installation errors of Amber
- David A Case (Mon Apr 20 2020 - 04:59:52 PDT)
- dhruvi.iiar.res.in (Sun Apr 19 2020 - 23:57:48 PDT)
- Hai Nguyen (Sat Apr 18 2020 - 18:42:38 PDT)
- Hai Nguyen (Sat Apr 18 2020 - 18:27:50 PDT)
- dhruvi.iiar.res.in (Sat Apr 18 2020 - 06:13:11 PDT)
- dhruvi.iiar.res.in (Fri Apr 17 2020 - 04:20:54 PDT)
[AMBER] restraining many individual atoms
- Ignacio J. General (Mon Apr 20 2020 - 13:31:21 PDT)
- David A Case (Mon Apr 20 2020 - 12:55:38 PDT)
- Ignacio J. General (Mon Apr 20 2020 - 12:48:36 PDT)
- James Kress (Mon Apr 20 2020 - 12:37:44 PDT)
- Ignacio General (Mon Apr 20 2020 - 11:06:01 PDT)
[AMBER] Restraint on certain atoms during MD
- Debarati DasGupta (Wed Apr 22 2020 - 15:10:04 PDT)
- Debarati DasGupta (Wed Apr 22 2020 - 15:22:03 PDT)
- Carlos Simmerling (Wed Apr 22 2020 - 15:19:29 PDT)
- Debarati DasGupta (Wed Apr 22 2020 - 15:07:16 PDT)
- Daniel Roe (Wed Apr 22 2020 - 14:00:03 PDT)
- David A Case (Wed Apr 22 2020 - 10:42:06 PDT)
- Debarati DasGupta (Wed Apr 22 2020 - 10:05:59 PDT)
- Debarati DasGupta (Wed Apr 22 2020 - 10:04:17 PDT)
- Carlos Simmerling (Wed Apr 22 2020 - 09:48:25 PDT)
- Debarati DasGupta (Wed Apr 22 2020 - 09:45:20 PDT)
- Carlos Simmerling (Wed Apr 22 2020 - 09:39:34 PDT)
- Debarati DasGupta (Wed Apr 22 2020 - 09:33:19 PDT)
- Carlos Simmerling (Wed Apr 22 2020 - 08:52:00 PDT)
- Debarati DasGupta (Wed Apr 22 2020 - 08:41:28 PDT)
- Debarati DasGupta (Wed Apr 22 2020 - 08:34:38 PDT)
- Carlos Simmerling (Wed Apr 22 2020 - 08:27:40 PDT)
- Debarati DasGupta (Tue Apr 21 2020 - 12:02:11 PDT)
- Carlos Simmerling (Tue Apr 21 2020 - 11:59:06 PDT)
- Debarati DasGupta (Tue Apr 21 2020 - 11:56:46 PDT)
- David A Case (Tue Apr 21 2020 - 11:54:45 PDT)
- Debarati DasGupta (Tue Apr 21 2020 - 05:45:15 PDT)
[AMBER] RST File Corrupt
- Czarny,Ryan (Tue Apr 14 2020 - 12:05:26 PDT)
- Carlos Simmerling (Tue Apr 14 2020 - 11:03:08 PDT)
- Czarny,Ryan (Tue Apr 14 2020 - 10:54:45 PDT)
[AMBER] RTX 2020 Super GPU Random Memory Errors
- Dow Hurst (Mon Apr 20 2020 - 10:30:53 PDT)
- Giorgos Lambrinidis (Wed Apr 01 2020 - 00:21:50 PDT)
[AMBER] Run Amber as a job array
- Anna Sekuła (Thu Apr 23 2020 - 07:32:56 PDT)
[AMBER] Running Steered MD Simulations using GPU
- Gerardo Zerbetto De Palma (Wed Apr 01 2020 - 08:51:51 PDT)
- Souvik Dey (Wed Apr 01 2020 - 08:48:18 PDT)
[AMBER] Sander can not calculate Mbar energy
- Gini (Wed Apr 22 2020 - 17:21:53 PDT)
[AMBER] Sander can't calculate Mbar energy
- swjjin0015.163.com (Tue Apr 21 2020 - 17:11:48 PDT)
- swjjin0015.163.com (Mon Apr 20 2020 - 18:31:19 PDT)
[AMBER] Sequence command to build the 4 - O glucuronuxylans chain
- Pinky Mazumder (Sun Apr 05 2020 - 15:46:10 PDT)
- Pinky Mazumder (Sun Apr 05 2020 - 15:00:22 PDT)
- Hector A. Baldoni (Sun Apr 05 2020 - 11:52:44 PDT)
- Karl Kirschner (Sun Apr 05 2020 - 01:17:37 PDT)
- Pinky Mazumder (Sat Apr 04 2020 - 19:26:03 PDT)
[AMBER] SHAKE ALgorithm and frcmod file
- Carlos Simmerling (Thu Apr 30 2020 - 14:18:27 PDT)
[AMBER] Simulating magnetite surfaces with AMBER
- Casalini Tommaso (Tue Apr 14 2020 - 02:44:23 PDT)
[AMBER] simulations of proteins with 2 domains connected by a linker
- Vlad Cojocaru (Thu Apr 16 2020 - 02:35:57 PDT)
[AMBER] sum of charges from parm file
- Pengfei Li (Thu Apr 09 2020 - 09:12:11 PDT)
- Lenka (Tue Mar 31 2020 - 15:47:47 PDT)
- Lenka (Tue Mar 31 2020 - 15:27:36 PDT)
[AMBER] Targeted MD
- Hector A. Baldoni (Tue Apr 21 2020 - 17:53:36 PDT)
[AMBER] thanks for the GB/SA section of the manual
- Antoine MARION (Fri Apr 17 2020 - 07:51:18 PDT)
- Carlos Simmerling (Fri Apr 17 2020 - 07:48:59 PDT)
- Antoine MARION (Fri Apr 17 2020 - 07:46:10 PDT)
[AMBER] TI simulations
- Debarati DasGupta (Thu Apr 30 2020 - 12:09:58 PDT)
[AMBER] tlea
- MYRIAN TORRES RICO (Thu Apr 30 2020 - 00:55:31 PDT)
- Lachele Foley (Wed Apr 29 2020 - 17:46:37 PDT)
- MYRIAN TORRES RICO (Tue Apr 28 2020 - 02:25:58 PDT)
[AMBER] tleap error
- MYRIAN TORRES RICO (Wed Apr 29 2020 - 03:23:30 PDT)
[AMBER] tleap for Mg2+ data type
- Sunita Patel (Thu Apr 09 2020 - 19:39:05 PDT)
- Pengfei Li (Thu Apr 09 2020 - 09:19:19 PDT)
[AMBER] tMD and pmemd
- Carlos Simmerling (Wed Apr 29 2020 - 17:42:35 PDT)
- Francesco Gentile (Wed Apr 29 2020 - 17:00:17 PDT)
[AMBER] topology problems
- David A Case (Wed Apr 08 2020 - 04:37:08 PDT)
- Matias Machado (Tue Apr 07 2020 - 12:28:09 PDT)
- Seibold, Steve Allan (Tue Apr 07 2020 - 09:58:59 PDT)
[AMBER] Tsolute and Tsolvent
- Eduardo R. Almeida (Mon Apr 27 2020 - 08:00:45 PDT)
[AMBER] Unavailability of AMBER tutorial on PCA
- Rodrigo Galindo-Murillo (Wed Apr 29 2020 - 10:27:10 PDT)
- Abhilash J (Wed Apr 29 2020 - 10:17:57 PDT)
- James Kress (Tue Apr 28 2020 - 15:38:23 PDT)
- Abhilash J (Tue Apr 28 2020 - 13:52:59 PDT)
[AMBER] unsubscribe
- Christopher Benjamin Coffey (Fri Apr 24 2020 - 08:19:20 PDT)
[AMBER] Using tleap tho have the .inpcrd and crd file
- ABEL Stephane (Thu Apr 30 2020 - 07:16:53 PDT)
- David A Case (Wed Apr 29 2020 - 04:20:58 PDT)
- ABEL Stephane (Tue Apr 28 2020 - 04:51:39 PDT)
[AMBER] Very low MMPBSA result
- Nada Afiva (Wed Apr 15 2020 - 12:36:01 PDT)
- Nada Afiva (Mon Apr 13 2020 - 18:41:59 PDT)
- Ray Luo (Mon Apr 13 2020 - 13:21:22 PDT)
- Nada Afiva (Mon Apr 13 2020 - 03:44:44 PDT)
- Ray Luo (Sun Apr 12 2020 - 09:01:23 PDT)
- Nada Afiva (Sat Apr 11 2020 - 23:10:28 PDT)
- David A Case (Sat Apr 11 2020 - 05:00:25 PDT)
- Nada Afiva (Sat Apr 11 2020 - 02:16:13 PDT)
- Ray Luo (Fri Apr 10 2020 - 18:42:27 PDT)
- Nada Afiva (Fri Apr 10 2020 - 17:54:22 PDT)
- Nada Afiva (Fri Apr 10 2020 - 16:46:09 PDT)
- Ray Luo (Fri Apr 10 2020 - 15:37:31 PDT)
- Nada Afiva (Fri Apr 10 2020 - 14:18:47 PDT)
[AMBER] Weird error with antechamber for metal ion / MCPB tutorial
- Pengfei Li (Thu Apr 09 2020 - 08:24:20 PDT)
[AMBER] Why is 360 degree is not equal to 0 degree in PES Scan?
- Erdem Yeler (Wed Apr 15 2020 - 13:59:10 PDT)
- Erdem Yeler (Tue Apr 14 2020 - 13:01:14 PDT)
- Hector A. Baldoni (Tue Apr 14 2020 - 07:47:13 PDT)
- Steven M. Graham (Tue Apr 14 2020 - 07:35:51 PDT)
- Gustavo Seabra (Tue Apr 14 2020 - 07:28:12 PDT)
- Lorenzo Gontrani (Sun Apr 12 2020 - 08:11:02 PDT)
- Ilyas Yildirim (Fri Apr 10 2020 - 16:15:46 PDT)
- Erdem Yeler (Fri Apr 10 2020 - 16:01:59 PDT)
[AMBER] wrong geometry amide nitrogen
- Junmei Wang (Thu Apr 30 2020 - 20:15:53 PDT)
- Arnaud Bondon (Thu Apr 30 2020 - 01:17:37 PDT)
- Junmei Wang (Wed Apr 29 2020 - 21:45:25 PDT)
- Arnaud Bondon (Wed Apr 29 2020 - 09:51:08 PDT)
- Arnaud Bondon (Wed Apr 29 2020 - 08:22:00 PDT)
- Arnaud Bondon (Wed Apr 29 2020 - 08:13:59 PDT)
- Junmei Wang (Wed Apr 29 2020 - 08:09:26 PDT)
- Arnaud Bondon (Wed Apr 29 2020 - 07:52:01 PDT)
- Junmei Wang (Wed Apr 29 2020 - 07:36:21 PDT)
- Junmei Wang (Wed Apr 29 2020 - 07:12:46 PDT)
- Arnaud Bondon (Wed Apr 29 2020 - 01:43:53 PDT)
- Junmei Wang (Tue Apr 28 2020 - 14:02:10 PDT)
- David A Case (Fri Apr 24 2020 - 08:01:49 PDT)
- Arnaud Bondon (Fri Apr 24 2020 - 06:56:37 PDT)
- Arnaud Bondon (Fri Apr 24 2020 - 04:40:58 PDT)
AmberTools19 update.8 fails to install
- mark.bergman.uphs.upenn.edu (Thu Apr 02 2020 - 08:29:23 PDT)

Amber Archive Apr 2020 by subject