[AMBER] minimizing a pyridine in water

From: Debarati DasGupta <debarati_dasgupta.hotmail.com>
Date: Sat, 25 Apr 2020 13:10:52 +0000

Hi everyone
I am trying to minimize a 1P3 molecule in TIP3P water and this is my input file

Initial Minimization on Whole System
&cntrl
  imin = 1,
  igb = 0,
  cut = 12,
  ntmin = 2,
maxcyc = 2000,
  ntb = 1,
ntr = 1, restraintmask = ':1P3', restraint_WT = 10,
/


I am using sander.MPI on 12 processors to run this minimization step...

I get this 1 page error, most of which I am unable to decipher

[cid:image001.png.01D61AE1.5EA78910]


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Received on Sat Apr 25 2020 - 06:30:02 PDT
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