Re: [AMBER] Sequence command to build the 4 - O glucuronuxylans chain

From: Pinky Mazumder <pmazumder67.gmail.com>
Date: Sun, 5 Apr 2020 17:00:22 -0500

Hi Dr. Baldoni,


Thank you so much for your information.


I have built this using the given webserver (www.glycam.org).

*DXylpb1-4DXylpb1-4DXylpb1-4DXylpb1-4[DGalp[4Me]a1-2]DXylpb1-4DXylpb1-OH*


The structure name is, 4-O-methyl-D-glucurono-D-xylan.

But the confusion is, I am not able to add the "*O with the methyl
derivative"*. Otherwise, everything is okay.


Could you please give me the solution?


Thank you again.


Kind regards,
Pinky

On Sun, Apr 5, 2020 at 1:53 PM Hector A. Baldoni <hbaldoni.unsl.edu.ar>
wrote:

> Hi Pinky,
>
> You can build your polisaccharide ussing the follwing webserver:
> http://glycam.org/docs/forcefield/glycam-naming-2/
> http://glycam.org/old/AMBER/
>
> Your hemicellulose will be somethik like this:
>
> DXylpb1-4DXylpb1-4DXylpb1-OH
>
> Hoppe this help you.
> Greeting,
> Hector.
>
>
>
> > Hi Amber Users,
> >
> >
> > I want to build a chain of hemicellulose (amorphus).
> >
> >
> > So, what will be the sequence command of 4-O glucuronuxylans (
> > hemicellulose )?
> >
> >
> > Could you please answer my question?
> >
> > Thank you.
> >
> > --
> > Pinky
> > UA
> > AL,US
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
> --------------------------------------
> Dr. Hector A. Baldoni
> Profesor Titular (FQByF-UNSL)
> Investigador Adjunto (IMASL-CONICET)
> Area de Quimica General e Inorganica
> Universidad Nacional de San Luis
> Chacabuco 917 (D5700BWS)
> San Luis - Argentina
> hbaldoni at unsl dot edu dot ar
> Tel.:+54-(0)266-4520300 ext. 6157
> --------------------------------------
>
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>


-- 
Pinky
AL,US
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sun Apr 05 2020 - 15:30:02 PDT
Custom Search