On Mon, Apr 20, 2020 at 5:04 PM Ravi Abrol <raviabrol.gmail.com> wrote:
> Thanks Dave.
> Our default python environment is 3.7.
>
> Running python2.7 from miniconda resolved the pytraj error.
>
>
In the future, you can always use `amber.python` that points to the python
version you used for amber.
PS: pytraj works fine with python 3, just in case you want to recompile the
suite with python 3 version.
Hai
> Ravi
>
>
> On Mon, Apr 20, 2020 at 5:06 AM David A Case <david.case.rutgers.edu>
> wrote:
>
> > On Mon, Apr 20, 2020, Ravi Abrol wrote:
> > >
> > >We are trying to run pytraj and getting the following error:
> >
> > What version of python are you using here?
> >
> > >Is this due to python2.7 lib folder in amber18 being incompatible with
> > >python3 environment
> >
> > That is my first guess.
> >
> > >
> > >A related question is, what is the currently recommended way to
> > install/run
> > >pytraj from AmberTools19?
> >
> > Say "yes" when prompted to download miniconda, which defaults to version
> > 2. Use that python (which will be in $AMBERHOME/miniconda/bin) to run
> > pytraj. The miniconda inside the $AMBERHOME folder won't interfere with
> > your system python.
> >
> > ....dac
> >
> >
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Received on Mon Apr 20 2020 - 21:00:02 PDT
