Amber Archive Apr 2007: by date

Sunday, 1 April 2007
- AMBER: phosphorylated residues yxamber
Monday, 2 April 2007
- AMBER: Error at Equilibration.... Sandeep Kaushik
- Re: AMBER: Error at Equilibration.... David A. Case
- AMBER: restraint command not taken deepti nayar
- AMBER: Problem with sander.MPI Sandeep Kaushik
- AMBER: RE: dihedral term charge dependence Williamson, Mark
- Re: AMBER: RE: dihedral term charge dependence Carlos Simmerling
- Re: AMBER: restraint command not taken Vlad Cojocaru
- AMBER: restraint command not taken deepti nayar
- AMBER: restraint command not taken deepti nayar
- Re: AMBER: restraint command not taken Vlad Cojocaru
- AMBER: Xleap errors Beale, John
- Re: AMBER: Xleap errors David A. Case
- AMBER: Cut off for cavities Sangwai, Ashishvikas
- Re: AMBER: phosphorylated residues David A. Case
- AMBER: Extra Points... How to Deal with Them David Cerutti
Tuesday, 3 April 2007
- Re: AMBER: Problem with PCSHIFT module Edoardo Saccenti
- AMBER: Sander.... Rita Cassia
- AMBER: nmode Marie Brut
- AMBER: Regarding Simulated Annealing Anju Sharma
- undefinedRe: AMBER: phosphorylated residues yxamber
- AMBER: RE: dihedral term charge dependence Kateryna Miroshnychenko
- AMBER: sander bomb janavi raghavan
- Re: AMBER: nmode David A. Case
- RE: AMBER: Sander.... Ross Walker
- RE: AMBER: sander bomb Ross Walker
- Re: AMBER: nmode Marie Brut
- RE: AMBER: Regarding Simulated Annealing Ross Walker
- Re: AMBER: nmode David A. Case
- RE: AMBER: enzyme kinetics in silico Xu, Yong
- Re: AMBER: enzyme kinetics in silico Sean Rathlef
- AMBER: principal axis calculation in Ptraj Esther Brugger
- AMBER: Energy minimization problem Bo Baker
- Re: AMBER: Energy minimization problem David A. Case
Wednesday, 4 April 2007
- AMBER: about define improper torsion in .frcmod file Chengwen Chen
- AMBER: parse radii AYTUG TUNCEL
- Re: AMBER: parse radii Holger Gohlke
- AMBER: FW: parameter Ross Walker
- Re: AMBER: about define improper torsion in .frcmod file David A. Case
- AMBER: choice of alpha carbons vs side chains Christopher Gaughan
- Re: AMBER: choice of alpha carbons vs side chains Bill Ross
- RE: AMBER: Energy minimization problem Bo Baker
- Re: AMBER: Energy minimization problem David A. Case
Thursday, 5 April 2007
- RE: AMBER: Energy minimization problem Bo Baker
- AMBER: Charges in antechamber Beale, John
- Re: AMBER: Charges in antechamber Scott Brozell
- AMBER: Problems during compilation and test. Liang, Lei
- AMBER: principal mask dorotation Esther Brugger
- AMBER: amber 9 installation: broken pipe Stern, Julie
- Re: AMBER: amber 9 installation: broken pipe Scott Brozell
- Re: AMBER: Problems during compilation and test. Scott Brozell
Friday, 6 April 2007
- AMBER: MD at constan pH tri nam Vo
- Re: AMBER: MD at constan pH Scott Brozell
- AMBER: Blue Gene, compile Amber9? Mike Hanby
- AMBER: netcdf support needed (Amber 9, sander imin = 5, -y flag) Chris Moth
- Re: AMBER: Blue Gene, compile Amber9? Carlos P. Sosa
- AMBER: SANDER PMEMD ntpr ntwx discrepancy (?bug? report) Chris Moth
- RE: AMBER: Blue Gene, compile Amber9? Ross Walker
- Re: AMBER: SANDER PMEMD ntpr ntwx discrepancy (?bug? report) David A. Case
- AMBER: PDB file format for AMBER Neelanjana Sengupta
- Re: AMBER: MD at constan pH tri nam Vo
- Re: AMBER: MD at constan pH tri nam Vo
- Re: AMBER: pH effect on protein folding tri nam Vo
Saturday, 7 April 2007
- Re: AMBER: PDB file format for AMBER David A. Case
- AMBER: Extra points... virial computation David Cerutti
Sunday, 8 April 2007
- AMBER: ptraj:problems with time correlation calculation (comp. with NMR experiments) anna.schrey.gmx.de
- AMBER: supplement ptraj:problems with time correlation calculation (comp. with NMR experiments) anna.schrey.gmx.de
- AMBER: ptraj hbond Evan Kelly
- Re: AMBER: ptraj hbond Evan Kelly
Monday, 9 April 2007
- Re: Re: AMBER: parse radii AYTUG TUNCEL
- AMBER: Fails to load libraries present in /leap/lib/ Neelanjana Sengupta
- Re: Re: AMBER: parse radii Gohlke.bioinformatik.uni-frankfurt.de
- AMBER: Vlad has Tagged you! :) Vlad Cojocaru
- AMBER: NTX=7 ?............lastist= ?...........lastrst= ????? Sandeep Kaushik
- AMBER: I'm sorry ... please ignore the junk !! Vlad Cojocaru
- AMBER: Question about MMPBSA v9 Cenk Andac
- Re: AMBER: NTX=7 ?............lastist= ?...........lastrst= ????? j j
- Re: AMBER: supplement ptraj:problems with time correlation calculation (comp. with NMR experiments) David A. Case
- Re: AMBER: Problems during compilation and test. Liang, Lei
- Re: AMBER: NTX=7 ?............lastist= ?...........lastrst= ????? David A. Case
- Re: AMBER: Fails to load libraries present in /leap/lib/ David A. Case
- Re: AMBER: ptraj:problems with time correlation calculation (comp. with NMR experiments) David A. Case
- AMBER: SANDER PMEMD ntpr ntwx discrepancy (?bug? report) Chris Moth
- AMBER: Constant volume simulations Christopher Gaughan
- Re: AMBER: Constant volume simulations David A. Case
- AMBER: Sander Bomb in subroutine nonbond_list Jingyuan Luke
- AMBER: Problem while using antechamber Anju Sharma
- AMBER: problem related to visualizing of structure deepti nayar
Tuesday, 10 April 2007
- Re: AMBER: Problem while using antechamber Benjamin Juhl
- Re: AMBER: problem related to visualizing of structure Vlad Cojocaru
- Re: AMBER: problem related to visualizing of structure deepti nayar
- Re: AMBER: problem related to visualizing of structure Vlad Cojocaru
- Re: AMBER: problem related to visualizing of structure deepti nayar
- RE: AMBER: Blue Gene, compile Amber9? Mike Hanby
- RE: AMBER: Blue Gene, compile Amber9? Mike Hanby
- Re: AMBER: Constant volume simulations Christopher Gaughan
- Re: AMBER: Constant volume simulations Carlos Simmerling
- Re: AMBER: Constant volume simulations Vlad Cojocaru
- Re: AMBER: Blue Gene, compile Amber9? Robert Duke
- Re: AMBER: Constant volume simulations Christopher Gaughan
- Re: AMBER: Constant volume simulations Vlad Cojocaru
- Re: AMBER: Constant volume simulations Christopher Gaughan
- Re: AMBER: Problem while using antechamber Anju Sharma
- AMBER: dihedral angles restraint for DNA Hu, Shaowen (JSC-SK)[USRA]
- AMBER: sander (AMBER 9) and -y flag -- not working? David Mobley
- Re: AMBER: sander (AMBER 9) and -y flag -- not working? Chris Moth
- Re: AMBER: sander (AMBER 9) and -y flag -- not working? David Mobley
- Re: AMBER: sander (AMBER 9) and -y flag -- not working? David Mobley
- Re: AMBER: sander (AMBER 9) and -y flag -- not working? Carlos Simmerling
- Re: AMBER: sander (AMBER 9) and -y flag -- not working? David Mobley
- RE: AMBER: Fails to load libraries present in /leap/lib/ Ross Walker
- RE: AMBER: NTX=7 ?............lastist= ?...........lastrst= ????? Ross Walker
- Re: AMBER: how to modify map.DG-AMBER file? A Box
- Re: AMBER: Problems during compilation and test. David A. Case
- Re: AMBER: Question about MMPBSA v9 David A. Case
Wednesday, 11 April 2007
- AMBER: amber9: running parallel error Khatcharin Siriwong
- AMBER: Prblm rgrdng Simulated Annealing Anju Sharma
- Re: AMBER: Question about MMPBSA v9 Cenk Andac
- AMBER: Problem with Sander restart file. Martin Stennett
- Re: AMBER: Problem with Sander restart file. Navnit Kumar Mishra
- Re: AMBER: Prblm rgrdng Simulated Annealing Carlos Simmerling
- Re: AMBER: Prblm rgrdng Simulated Annealing Anju Sharma
- Re: AMBER: Prblm rgrdng Simulated Annealing Carlos Simmerling
- Re: AMBER: Prblm rgrdng Simulated Annealing Anju Sharma
- Re: AMBER: Problem with Sander restart file. Martin Stennett
- RE: AMBER: amber9: running parallel error Ross Walker
- AMBER: temperature artifacts with andersen and GB? David Mobley
- AMBER: working with Antechamber Atila Iamarino
- Re: AMBER: Problem with Sander restart file. David A. Case
- Re: AMBER: working with Antechamber David Mobley
- AMBER: CHARMM vs. AMBER ff literature Seth Lilavivat
- Re: AMBER: working with Antechamber Atila Iamarino
- Re: AMBER: working with Antechamber David A. Case
- Re: AMBER: CHARMM vs. AMBER ff literature Thomas Cheatham
- AMBER: Attaching capping groups Neelanjana Sengupta
- Re: AMBER: Attaching capping groups Kristina Furse
- RE: AMBER: amber9: running parallel error Khatcharin Siriwong
- RE: AMBER: Attaching capping groups Ross Walker
- AMBER: Needed help regardng Simulated Annealing Anju Sharma
- Re: AMBER: NTX=7 ?............lastist= ?...........lastrst= ????? Sandeep Kaushik
Thursday, 12 April 2007
- AMBER: How can I modify the frcmod file of ligand with a nonstandard guanidine tonglei
- Re: AMBER: amber9: running parallel error Benjamin Juhl
- AMBER: topology for postprocessed files? anna.schrey.gmx.de
- Re: AMBER: topology for postprocessed files? Vlad Cojocaru
- Re: AMBER: topology for postprocessed files? anna.schrey.gmx.de
- Re: AMBER: Problem with PCSHIFT module Edoardo Saccenti
- Re: AMBER: CHARMM vs. AMBER ff literature Jiri Sponer
- AMBER: nscm in simulation annealing Hu, Shaowen (JSC-SK)[USRA]
- Re: AMBER: nscm in simulation annealing David A. Case
- AMBER: bad atom type errors in GB for halides? David Mobley
- RE: AMBER: nscm in simulation annealing Hu, Shaowen (JSC-SK)[USRA]
- Re: AMBER: bad atom type errors in GB for halides? Ilyas Yildirim
- AMBER: Multiple Bonds to one Atom crowfoot.unr.nevada.edu
- Re: AMBER: bad atom type errors in GB for halides? David A. Case
- Re: AMBER: nscm in simulation annealing David A. Case
- Re: AMBER: Attaching capping groups Neelanjana Sengupta
Friday, 13 April 2007
- AMBER: polarization and water density Thérèse Malliavin
- AMBER: AMBER9 installation error on dual core AMD Opteron(tm) processor 275 Arvind Marathe
- Re: AMBER: AMBER9 installation error on dual core AMD Opteron(tm) processor 275 Mark Williamson
- RE: AMBER: nscm in simulation annealing Hu, Shaowen (JSC-SK)[USRA]
- Re: AMBER: AMBER9 installation error on dual core AMD Opteron(tm) processor 275 Arvind Marathe
- AMBER: Restraints and free energy Sophie Barbe
- Re: AMBER: nscm in simulation annealing David A. Case
- Re: AMBER: Restraints and free energy David A. Case
- AMBER: Explicit water opinion Hayden Eastwood
- RE: AMBER: nscm in simulation annealing Hu, Shaowen (JSC-SK)[USRA]
- AMBER: Amber:PBSA&Extract_coords problem (Needed help) odde
- Re: AMBER: nscm in simulation annealing David A. Case
- Re: AMBER: polarization and water density David A. Case
- RE: AMBER: nscm in simulation annealing Hu, Shaowen (JSC-SK)[USRA]
- Re: AMBER: Explicit water opinion David Cerutti
- AMBER: QMMM with printcharges Kijeong Kwac
Saturday, 14 April 2007
- AMBER: mdfil.f Peljidiyn Genden
- Re: AMBER: Amber:PBSA&Extract_coords problem (Needed help) Jiten
- AMBER: Amber 8 support of CHARMM ff? Seth Lilavivat
- Re: AMBER: Amber 8 support of CHARMM ff? David A. Case
Sunday, 15 April 2007
- AMBER: Release of the R.E.D.-III tools FyD
- AMBER: membrane simulation Jojart Balazs
- RE: AMBER: Attaching capping groups Ross Walker
- Re: AMBER: Problem with PCSHIFT module David A. Case
- Re: AMBER: membrane simulation nag raj
- AMBER: H-bond analysis............acceptorH absent..!!! Sandeep Kaushik
Monday, 16 April 2007
- Re: AMBER: membrane simulation Florian Haberl
- AMBER: Projecting trajectories onto normal modes Harald Lanig
- Re: AMBER: Projecting trajectories onto normal modes M. L. Dodson
- RE: AMBER: mdfil.f Ross Walker
- Re: AMBER: mdfil.f Robert Duke
- Re: AMBER: mdfil.f David A. Case
- AMBER: ptraj and quasi harmonic analysis Hans Lee
- AMBER: MM-PBSA_binding energy script error odde
- AMBER: Re: amber mm-pbsa problem Jiten
Tuesday, 17 April 2007
- AMBER: problem with calculating RMSD tri nam Vo
- AMBER: vmd and amber deepti nayar
- AMBER: PDBs Beale, John
- Re: AMBER: vmd and amber Gustavo Seabra
- Re: AMBER: problem with calculating RMSD Gustavo Seabra
- Re: AMBER: PDBs John E. Kerrigan
- AMBER: ptraj secstruct core dumped error vijayaraj.clri.info
- Re: AMBER: Re: amber mm-pbsa problem odde
- Re: AMBER: nscm in simulation annealing David A. Case
- RE: AMBER: nscm in simulation annealing Hu, Shaowen (JSC-SK)[USRA]
- RE: AMBER: nscm in simulation annealing Hu, Shaowen (JSC-SK)[USRA]
- RE: AMBER: nscm in simulation annealing Ross Walker
- RE: AMBER: nscm in simulation annealing Hu, Shaowen (JSC-SK)[USRA]
- AMBER: Request for addition of a useful command in ptraj module of AMBER Cenk Andac
- AMBER: Request for addition of a useful command in ptraj module of AMBER #2 Cenk Andac
- AMBER: Re: MM-PBSA amber script problem odde
- AMBER: single solvated glycine simulation - zwitterion, cation, anion parameters? Nicolas Lux Fawzi
- AMBER: using glycam04 parameters Sara Alexandra Moura
- Re: AMBER: Re: MM-PBSA amber script problem David A. Case
- Re: AMBER: using glycam04 parameters David A. Case
- RE: AMBER: QMMM with printcharges Ross Walker
- AMBER: single solvated glycine simulation - zwitterion, cation, anion parameters? 2nd try Nicolas Lux Fawzi
- Re: AMBER: single solvated glycine simulation - zwitterion, cation, anion parameters? 2nd try Pradipta Bandyopadhyay
- AMBER: frcmod file deepti nayar
- AMBER: printcharges option when using QM/MM simulation 한재범
Wednesday, 18 April 2007
- RE: AMBER: amber9: running parallel error Khatcharin Siriwong
- Re: AMBER: amber9: running parallel error Khatcharin Siriwong
- Re: AMBER: problem with calculating RMSD tri nam Vo
- Re: AMBER: using glycam04 parameters FyD
- AMBER: Protonation/deprotonation of terminal residues Jesper Soerensen
- Re: AMBER: using glycam04 parameters Austin B. Yongye
- Re: AMBER: ptraj and quasi harmonic analysis Hans Lee
- Re: AMBER: problem with calculating RMSD Gustavo Seabra
- Re: AMBER: using glycam04 parameters Sara Alexandra Moura
- Re: AMBER: using glycam04 parameters Sara Alexandra Moura
- Re: AMBER: frcmod file David A. Case
- AMBER: signal SIGSEGV(11) Pankaj R. Daga
- Re: AMBER: using glycam04 parameters David A. Case
- RE: AMBER: printcharges option when using QM/MM simulation Ross Walker
- Re: AMBER: signal SIGSEGV(11) David A. Case
- RE: AMBER: frcmod file Ross Walker
- Re: AMBER: using glycam04 parameters Austin B. Yongye
- RE: AMBER: problem with calculating RMSD Ross Walker
- AMBER: ff02 + POL3 - polar interactions !! Pradipta Bandyopadhyay
- RE: AMBER: signal SIGSEGV(11) Ross Walker
- Re: AMBER: ptraj and quasi harmonic analysis Myunggi Yi
- Re: AMBER: topology for postprocessed files? anna.schrey.gmx.de
- Re: AMBER: Protonation/deprotonation of terminal residues FyD
- Re: AMBER: signal SIGSEGV(11) Pankaj R. Daga
- AMBER: Antechamber Warning Beale, John
- Re: AMBER: signal SIGSEGV(11) Chris Moth
- AMBER: ptraj bug? Tamara Rogers
- AMBER: Sander BOMB.. simulation terminates by itself... Vijay Manickam Achari
- Re: AMBER: membrane simulation nag raj
- AMBER: Ewald BOMB....... what is this.. Vijay Manickam Achari
Thursday, 19 April 2007
- Re: AMBER: membrane simulation Vlad Cojocaru
- Re: AMBER: membrane simulation nag raj
- AMBER: Antechamber Beale, John
- RE: AMBER: Antechamber Junmei Wang
- RE: AMBER: Blue Gene, compile Amber9? Mike Hanby
- AMBER: regarding frcmod file Santanu Roy
- AMBER: RE: RE: AMBER: QMMM with printcharges Kijeong Kwac
- Re: AMBER: regarding frcmod file Gustavo Seabra
- Re: AMBER: regarding frcmod file David A. Case
- Re: AMBER: using glycam04 parameters Sara Alexandra Moura
- RE: AMBER: RE: RE: AMBER: QMMM with printcharges Ross Walker
- Re: AMBER: using glycam04 parameters kkirschn.hamilton.edu
- Re: AMBER: using glycam04 parameters Sara Alexandra Moura
- RE: AMBER: using glycam04 parameters Ross Walker
- AMBER: ptraj and quasi harmonic analysis Chris Moth
- AMBER: Problems with Machine file for sander.MPI Terry Lang
- Re: AMBER: ptraj and quasi harmonic analysis Thomas Cheatham III
- RE: AMBER: Problems with Machine file for sander.MPI Ross Walker
- Re: AMBER: Blue Gene, compile Amber9? David A. Case
- AMBER: AIX 5 test failures: -NaNQ Patrick McCarren
- Re: AMBER: AIX 5 test failures: -NaNQ Scott Brozell
- Re: AMBER: AIX 5 test failures: -NaNQ David A. Case
- RE: AMBER: AIX 5 test failures: -NaNQ Ross Walker
- Re: AMBER: ptraj and quasi harmonic analysis Hans Lee
- AMBER: QM/MM NPT Simulation Daniel Oehme
- AMBER: A test email Ruchi Sachdeva
Friday, 20 April 2007
- AMBER: process and plot matrix data Vlad Cojocaru
- Re: AMBER: process and plot matrix data Patrick McCarren
- AMBER: rigid epoxide substrate Dr M. Blomberg
- Re: AMBER: process and plot matrix data Vlad Cojocaru
- Re: AMBER: ptraj and quasi harmonic analysis David A. Case
- RE: AMBER: QM/MM NPT Simulation Ross Walker
- Re: AMBER: rigid epoxide substrate David A. Case
- Re: AMBER: ptraj and quasi harmonic analysis Hans Lee
- Re: AMBER: ptraj and quasi harmonic analysis David A. Case
- RE: AMBER: Blue Gene, compile Amber9? Mike Hanby
- AMBER: restraint value: written but none specified Ben Sattelle
- Re: AMBER: restraint value: written but none specified Chris Moth
- Re: AMBER: restraint value: written but none specified David A. Case
- Re: AMBER: restraint value: written but none specified Ben Sattelle
- Re: AMBER: restraint value: written but none specified Ben Sattelle
- RE: AMBER: restraint value: written but none specified Ross Walker
- RE: AMBER: restraint value: written but none specified Ben Sattelle
- Re: AMBER: AIX 5 test failures: -NaNQ Patrick McCarren
Saturday, 21 April 2007
- AMBER: Error: "Suspended (tty input)" & "Unit 6 Error on OPEN: md.out" Khatcharin Siriwong
- RE: AMBER: Ewald BOMB....... what is this.. Ross Walker
- Re: AMBER: Error: "Suspended (tty input)" & "Unit 6 Error on OPEN: md.out" David A. Case
- Re: AMBER: Error: "Suspended (tty input)" & "Unit 6 Error on OPEN: md.out" Khatcharin Siriwong
Sunday, 22 April 2007
- AMBER: mol2 format Jardas sucuriba
- AMBER: .prmtop entries Neelanjana Sengupta
- AMBER: problem regarding implicit simulation gurpreet singh
Monday, 23 April 2007
- AMBER: prep file new residue Dr M. Blomberg
- Re: AMBER: mol2 format j j
- Re: AMBER: .prmtop entries Andy Purkiss-Trew
- Re: AMBER: problem regarding implicit simulation Carlos Simmerling
- AMBER: MM-PBSA: decompose energy error jitrayut jitonnom
- Re: AMBER: MM-PBSA: decompose energy error Sergey Samsonov
- Re: AMBER: is possible to compile pmemd using scali MPI? Andrea Bortolato
- AMBER: MM-PBSA: Can't finish the binding energy process jitrayut jitonnom
- Re: AMBER: MM-PBSA: Can't finish the binding energy process Navnit Kumar Mishra
- AMBER: Problem using Ptraj alfredoq.fcq.unc.edu.ar
- Re: AMBER: Problem using Ptraj j j
- Re: AMBER: Problem using Ptraj Thomas Cheatham III
- Re: AMBER: AIX 5 test failures: -NaNQ Scott Brozell
- AMBER: Problems with AMBER8 on 32-bit FC6 David LeBard
- Re: AMBER: Problems with AMBER8 on 32-bit FC6 David A. Case
- Re: AMBER: Request for addition of a useful command in ptraj module of AMBER #2 Melinda Layten
- Re: AMBER: AIX 5 test failures: -NaNQ Patrick McCarren
- Re: AMBER: Request for addition of a useful command in ptraj module of AMBER #2 Cenk Andac
- RE: AMBER: AIX 5 test failures: -NaNQ Ross Walker
- AMBER: Error on compile amber8 tri nam Vo
- Re: AMBER: Error on compile amber8 David LeBard
- Re: AMBER: Error on compile amber8 tri nam Vo
Tuesday, 24 April 2007
- AMBER: QM/MM simulation with SCC-DFTB 한재범
- Re: AMBER: Request for addition of a useful command in ptraj module of AMBER #2 Vlad Cojocaru
- Re: AMBER: QM/MM simulation with SCC-DFTB Gustavo Seabra
- Re: AMBER: problem regarding implicit simulation gurpreet singh
- Re: AMBER: problem regarding implicit simulation Carlos Simmerling
- Re: AMBER: signal SIGSEGV(11) Pankaj R. Daga
- AMBER: Extracting Coords&MMPBSA&ambpdb Srinivas Odde
- AMBER: amber equation of ff99 Chengwen Chen
- Re: AMBER: amber equation of ff99 Carlos Simmerling
- Re: AMBER:a question about RMSD Carlos Simmerling
- AMBER: NAD parameters Jardas sucuriba
- Re: AMBER: prep file new residue David A. Case
- AMBER: mobile proton algorithm HL Eastwood
- RE: AMBER: NAD parameters Ross Walker
- RE: AMBER: signal SIGSEGV(11) Ross Walker
- Re: AMBER: Problems with Machine file for sander.MPI Terry Lang
- AMBER: Error on compiling AMBER8 tri nam Vo
- Re: AMBER: amber equation of ff99 Chengwen Chen
- Re: AMBER: Error on compiling AMBER8 David A. Case
- AMBER: ptraj error- glibc detected free(): invalid pointer: 0x0812bb38 Ruchi Sachdeva
Wednesday, 25 April 2007
- AMBER: Work with constand pH tri nam Vo
- Re: AMBER: Work with constand pH Myunggi Yi
- Re: AMBER: Error on compiling AMBER8 tri nam Vo
- Re: AMBER: Error on compiling AMBER8 David A. Case
- Re: AMBER: using glycam04 parameters kkirschn.hamilton.edu
- RE: AMBER: NAD parameters Jardas sucuriba
- Re: AMBER: AIX 5 test failures: -NaNQ Patrick McCarren
- AMBER: Employing SCC-DFTB with a periodic boundary condtion 한재범
Thursday, 26 April 2007
- AMBER: protein-rna interaction & mmpbsa Antonio Morreale
- Re: AMBER: Employing SCC-DFTB with a periodic boundary condtion Gustavo Seabra
- Re: AMBER: Work with constand pH tri nam Vo
Friday, 27 April 2007
- AMBER: Problems installing Amber9 Ângela dos Reis
- AMBER: Error in protonating Neelanjana Sengupta
- Re: AMBER: Problems installing Amber9 Andreas Svrcek-Seiler
- AMBER: Print individual free energies in MD trajectories using MM_PBSA Giulio Rastelli
- RE: AMBER: Error in protonating Ross Walker
- RE: AMBER: Problems installing Amber9 Ross Walker
- Re: AMBER: Problems installing Amber9 Ângela dos Reis
- Re: AMBER: ptraj error- glibc detected free(): invalid pointer: 0x0812bb38 Scott Brozell
- Re: AMBER: ptraj error- glibc detected free(): invalid pointer: 0x0812bb38 Bill Ross
- AMBER: QM/MM Umbrella sampling Jason DeChancie
- RE: AMBER: QM/MM Umbrella sampling Ross Walker
- Re: AMBER: ptraj error- glibc detected free(): invalid pointer: 0x0812bb38 Bill Ross
- Re: AMBER: Work with constand pH Myunggi Yi
Saturday, 28 April 2007
- Re: AMBER: QM/MM Umbrella sampling Jerome.GOLEBIOWSKI.unice.fr
- AMBER: thermodynamic integration Servaas Michielssens
- Re: AMBER: Error in protonating David A. Case
- Re: AMBER: thermodynamic integration David A. Case
Sunday, 29 April 2007
- AMBER: Binding free energy errors: Grid setting fail jitrayut jitonnom
Monday, 30 April 2007
- AMBER: a problem of surface area calulated by MM/PBSA Chengwen Chen
- AMBER: Problem with MM-PBSA statistics Henar Martínez García
- AMBER: Problem with calcpka.pl and constant pH Hayden Eastwood
- AMBER: Problem with calcpka.pl and constant pH Hayden Eastwood
- AMBER: AMBER MINIMIZATION Sophie Barbe
- Re: AMBER: a problem of surface area calulated by MM/PBSA David A. Case
- Re: AMBER: AMBER MINIMIZATION David A. Case
- AMBER: PDB files Beale, John
- Re: AMBER: AMBER MINIMIZATION Sophie Barbe
- RE: AMBER: PDB files Hayden Eastwood
- RE: AMBER: PDB files Hayden Eastwood
- Re: AMBER: PDB files David A. Case
- Re: AMBER: AMBER MINIMIZATION gsciaini.qi.fcen.uba.ar
- AMBER: pressure tensor in a slab configuration rdauria.uci.edu

Last message date: Wed May 02 2007 - 06:07:23 PDT
Archived on: Fri Apr 26 2024 - 05:53:37 PDT

Amber Archive Apr 2007 by date