AMBER: sander (AMBER 9) and -y flag -- not working?

From: David Mobley <>
Date: Tue, 10 Apr 2007 11:22:39 -0700


I'm trying to use the -y flag of Sander, as described on pages 87 and
90 of the AMBER 9 manual, to evaluate certain energies of a stored
trajectory using slightly modified run parameters. I've set imin=5.
However, Sander complains that -y is an unknown flag.

Is the -y flag obsolete, or is there a bug, or...?

The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to
Received on Wed Apr 11 2007 - 06:07:42 PDT
Custom Search