AMBER: Error in protonating

From: Neelanjana Sengupta <senguptan.gmail.com>
Date: Fri, 27 Apr 2007 04:31:52 -0700

Dear Amber users,

In protonating a peptide (coordinates available in pdb format), I use the
foll. command:

protonate -d PROTON_INFO < peptide.pdb > peptide2.pdb

and, I get the foll. error:

:-) G R O M A C S (-:
Segmentation fault

The peptide2.pdb does get created, but is a blank file. Could someone point
out what's missing here? I am using amber7.

Thanks, 
-- 
****************************************
Neelanjana Sengupta, PhD student
Dept. of Chemistry
Univ. of California-Irvine
Irvine, CA 92697
USA
Phone: 1-949-824 9921
email: sengupta.uci.edu
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Received on Sun Apr 29 2007 - 06:07:34 PDT
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