AMBER: working with Antechamber

From: Atila Iamarino <>
Date: Wed, 11 Apr 2007 14:45:20 -0300

Dear Case,

I'm trying to generate topology files for ritonavir, a HIV1 protease
inhibitor, following the Efavirenz tutorial. I don't know which Force
field I should use. Using either xleap or PRODRG server antechamber
crashes and doesn't understand the bonds.
Attached are the files from xleap and prodrg

Atila Iamarino
L.E.M.B. - Laboratory of Molecular Evolution and Bioinformatics
Av. Prof. Lineu Prestes, 1734 - USP (University of São Paulo) - ICB
Zip: 05508-000 Phone: +55 11 30917290 / +55 11 30918453

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Received on Sun Apr 15 2007 - 06:07:08 PDT
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