AMBER: protein-rna interaction & mmpbsa

From: Antonio Morreale <>
Date: Thu, 26 Apr 2007 10:28:19 +0200

Dear members,

I am trying to obtain the interaction energy between a protein and rna
strand using script. Once that the trajectory has been
performed, the output from script showed no cancelation of
the internal energy. I have been doing many calculations for
protein-ligand interaction without this problem. Also, the ras-raf
example shows a cancelation of this term. Any hint on this?

Thanks in advance.
Antonio Morreale
Unidad de Bioinformática
Centro de Biologia Molecular "Severo Ochoa"
Universidad Autonoma de Madrid
Cantoblanco, 28049 Madrid (Spain)
Phone: (34) 91-497-2377
Fax:   (34) 91-397-4799
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Received on Sun Apr 29 2007 - 06:07:18 PDT
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