Amber Archive Feb 2021 by thread
249 messages
:
Starting
Sun Jan 31 2021 - 08:30:02 PST,
Ending
Wed Feb 24 2021 - 05:30:03 PST
This period
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Re: [AMBER] Non zero ligand warning
Ayesha Fatima
(Sun Jan 31 2021 - 08:12:55 PST)
Re: [AMBER] Non zero ligand warning
Ayesha Fatima
(Sun Jan 31 2021 - 08:41:24 PST)
[AMBER] how does tleap choose missing side chain conformations
Vaibhav Dixit
(Sun Jan 31 2021 - 19:51:51 PST)
Re: [AMBER] how does tleap choose missing side chain conformations
Carlos Simmerling
(Mon Feb 01 2021 - 03:23:01 PST)
Re: [AMBER] how does tleap choose missing side chain conformations
Vaibhav Dixit
(Tue Feb 02 2021 - 03:07:48 PST)
[AMBER] configure_mpich error
Nikolay N. Kuzmich
(Mon Feb 01 2021 - 03:36:23 PST)
Re: [AMBER] configure_mpich error
David A Case
(Mon Feb 01 2021 - 04:47:52 PST)
Re: [AMBER] configure_mpich error
Nikolay N. Kuzmich
(Tue Feb 02 2021 - 08:29:49 PST)
[AMBER] erro free energy calculation
Renato Araujo
(Mon Feb 01 2021 - 03:56:21 PST)
Re: [AMBER] erro free energy calculation
David A Case
(Mon Feb 01 2021 - 04:55:18 PST)
[AMBER] Solution to the replica exchange SGLD restart bug
Charo del Genio
(Mon Feb 01 2021 - 13:40:41 PST)
Re: [AMBER] max pairlist cutoff must be less than unit cell max sphere radius!
Pinky Mazumder
(Mon Feb 01 2021 - 14:27:11 PST)
Re: [AMBER] max pairlist cutoff must be less than unit cell max sphere radius!
Carlos Simmerling
(Mon Feb 01 2021 - 15:27:34 PST)
[AMBER] QM/MM in Amber
Женя Елизарова
(Tue Feb 02 2021 - 01:25:23 PST)
Re: [AMBER] QM/MM in Amber
Женя Елизарова
(Tue Feb 02 2021 - 01:31:05 PST)
Re: [AMBER] QM/MM in Amber
David A Case
(Tue Feb 02 2021 - 05:30:39 PST)
[AMBER] Hydrogen bond analysis tutorial
Renato Araujo
(Tue Feb 02 2021 - 11:13:29 PST)
Re: [AMBER] Hydrogen bond analysis tutorial
Maria Nagan
(Tue Feb 02 2021 - 11:21:07 PST)
[AMBER] error while building Amber20 with Intel + CUDA
Susan Chacko
(Tue Feb 02 2021 - 12:20:43 PST)
Re: [AMBER] error while building Amber20 with Intel + CUDA
David A Case
(Tue Feb 02 2021 - 13:27:40 PST)
Re: [AMBER] error while building Amber20 with Intel + CUDA
Susan Chacko
(Tue Feb 02 2021 - 13:33:46 PST)
Re: [AMBER] Found bug in sander in restarting SGLD replica exchange runs
Carlos Simmerling
(Tue Feb 02 2021 - 17:03:28 PST)
[AMBER] Random seed for restart files that have velocities?
Liao
(Tue Feb 02 2021 - 18:15:57 PST)
Re: [AMBER] Random seed for restart files that have velocities?
Carlos Simmerling
(Tue Feb 02 2021 - 18:42:50 PST)
Re: [AMBER] Random seed for restart files that have velocities?
Liao
(Tue Feb 02 2021 - 19:58:02 PST)
Re: [AMBER] Random seed for restart files that have velocities?
David A Case
(Wed Feb 03 2021 - 05:44:00 PST)
[AMBER] ModuleNotFoundError: No module named 'MMPBSA_mods'
Ch Bilal
(Wed Feb 03 2021 - 00:35:26 PST)
Re: [AMBER] ModuleNotFoundError: No module named 'MMPBSA_mods'
David A Case
(Wed Feb 03 2021 - 05:47:56 PST)
[AMBER] Nudged Elastic Band solvent choice and initial heating problem
李明玉
(Wed Feb 03 2021 - 04:12:45 PST)
Re: [AMBER] Nudged Elastic Band solvent choice and initial heating problem
Carlos Simmerling
(Wed Feb 03 2021 - 05:17:30 PST)
Re: [AMBER] Nudged Elastic Band solvent choice and initial heating problem
李明玉
(Wed Feb 03 2021 - 09:01:09 PST)
Re: [AMBER] Nudged Elastic Band solvent choice and initial heating problem
Carlos Simmerling
(Wed Feb 03 2021 - 09:17:26 PST)
Re: [AMBER] Nudged Elastic Band solvent choice and initial heating problem
David A Case
(Wed Feb 03 2021 - 06:00:45 PST)
[AMBER] AMBER HREMD replica trajectory
Richard Kullmann
(Wed Feb 03 2021 - 06:34:11 PST)
Re: [AMBER] AMBER HREMD replica trajectory
Daniel Roe
(Wed Feb 03 2021 - 06:46:39 PST)
[AMBER] CPPTRAJ mindist comand
Richard Kullmann
(Wed Feb 24 2021 - 03:07:41 PST)
Re: [AMBER] CPPTRAJ mindist comand
Daniel Roe
(Wed Feb 24 2021 - 04:15:26 PST)
[AMBER] GPU power usage drop for igb = 8 compared to igb = 2
Demian Riccardi
(Wed Feb 03 2021 - 14:48:45 PST)
Re: [AMBER] GPU power usage drop for igb = 8 compared to igb = 2
Carlos Simmerling
(Wed Feb 03 2021 - 15:19:47 PST)
[AMBER] Prepare pbd file modified cyclodextrin
Игорь Злотников
(Thu Feb 04 2021 - 00:52:45 PST)
[AMBER] Fwd: Prepare pbd file modified cyclodextrin
Игорь Злотников
(Sun Feb 14 2021 - 04:16:16 PST)
[AMBER] CUDE upgrade question and AMBER
Seibold, Steve Allan
(Thu Feb 04 2021 - 10:00:30 PST)
[AMBER] MMPBSA.py Error: Could not import Amber Python modules
Vitor Rabelo
(Thu Feb 04 2021 - 11:08:49 PST)
Re: [AMBER] Bug in the Mol2 format: space converted into a new oxygen atom
liu junjun
(Thu Feb 04 2021 - 12:22:25 PST)
Re: [AMBER] Bug in the Mol2 format: space converted into a new oxygen atom
Junmei Wang
(Mon Feb 08 2021 - 06:26:44 PST)
Re: [AMBER] Bug in the Mol2 format: space converted into a new oxygen atom
David A Case
(Mon Feb 22 2021 - 05:02:55 PST)
[AMBER] decompose running error
Nisha Amarnath Jonniya
(Thu Feb 04 2021 - 22:23:23 PST)
Re: [AMBER] decompose running error
David A Case
(Fri Feb 05 2021 - 05:45:06 PST)
Re: [AMBER] decompose running error
Nisha Amarnath Jonniya
(Mon Feb 08 2021 - 21:25:41 PST)
Re: [AMBER] decompose running error
Nisha Amarnath Jonniya
(Mon Feb 08 2021 - 21:31:45 PST)
[AMBER] RAMD question (Xiaodong Wu)
吴晓东
(Fri Feb 05 2021 - 01:19:57 PST)
Re: [AMBER] RAMD question (Xiaodong Wu)
Carlos Simmerling
(Fri Feb 05 2021 - 03:39:34 PST)
Re: [AMBER] RAMD question (Xiaodong Wu)
Charles Lin
(Fri Feb 05 2021 - 10:53:31 PST)
Re: [AMBER] RAMD question (Xiaodong Wu)
Charles Lin
(Fri Feb 05 2021 - 10:59:28 PST)
[AMBER] Prmtop missing resid and resname info
Violeta Burns Casamayor
(Fri Feb 05 2021 - 01:55:31 PST)
Re: [AMBER] Prmtop missing resid and resname info
Carlos Simmerling
(Fri Feb 05 2021 - 03:38:44 PST)
Re: [AMBER] Prmtop missing resid and resname info
Kenneth Huang
(Fri Feb 05 2021 - 07:21:00 PST)
Re: [AMBER] Fwd: unreadable *.mdcrd
David A Case
(Fri Feb 05 2021 - 05:51:40 PST)
Re: [AMBER] Fwd: unreadable *.mdcrd
Tomasz Miernik
(Fri Feb 05 2021 - 14:07:04 PST)
Re: [AMBER] Fwd: unreadable *.mdcrd
Elvis A F Martis
(Fri Feb 05 2021 - 17:01:30 PST)
[AMBER] curiosity about sander reading a traj being written by GPU code
Vaibhav Dixit
(Fri Feb 05 2021 - 08:39:10 PST)
Re: [AMBER] curiosity about sander reading a traj being written by GPU code
Vaibhav Dixit
(Sat Feb 06 2021 - 05:15:31 PST)
Re: [AMBER] curiosity about sander reading a traj being written by GPU code
Vaibhav Dixit
(Mon Feb 08 2021 - 20:39:57 PST)
Re: [AMBER] curiosity about sander reading a traj being written by GPU code
Carlos Simmerling
(Tue Feb 09 2021 - 03:35:27 PST)
Re: [AMBER] curiosity about sander reading a traj being written by GPU code
Vaibhav Dixit
(Tue Feb 09 2021 - 04:14:06 PST)
Re: [AMBER] curiosity about sander reading a traj being written by GPU code
Adrian Roitberg
(Tue Feb 09 2021 - 07:37:35 PST)
Re: [AMBER] curiosity about sander reading a traj being written by GPU code
Kenneth Huang
(Tue Feb 09 2021 - 08:15:35 PST)
Re: [AMBER] curiosity about sander reading a traj being written by GPU code
Vaibhav Dixit
(Wed Feb 10 2021 - 02:41:39 PST)
Re: [AMBER] curiosity about sander reading a traj being written by GPU code
Vaibhav Dixit
(Wed Feb 10 2021 - 02:51:53 PST)
[AMBER] External electric fields cannot be used when npt > 0
李明玉
(Fri Feb 05 2021 - 09:19:49 PST)
[AMBER] suggestion of a patch for building MPI version of MMPBSA.py
Yoshitaka Moriwaki
(Fri Feb 05 2021 - 09:43:17 PST)
Re: [AMBER] suggestion of a patch for building MPI version of MMPBSA.py
David A Case
(Fri Feb 05 2021 - 11:53:12 PST)
Re: [AMBER] suggestion of a patch for building MPI version of MMPBSA.py
Yoshitaka Moriwaki
(Sat Feb 06 2021 - 02:18:28 PST)
Re: [AMBER] suggestion of a patch for building MPI version of MMPBSA.py
David A Case
(Sat Feb 06 2021 - 05:49:42 PST)
[AMBER] problem deriving implicit polarised charges charges with mdgx
Luis Simon
(Fri Feb 05 2021 - 13:10:59 PST)
Re: [AMBER] problem deriving implicit polarised charges charges with mdgx
Luis Simon
(Sun Feb 07 2021 - 13:29:15 PST)
[AMBER] About changes in frcmod.parmbsc0
Alan
(Sat Feb 06 2021 - 00:12:55 PST)
Re: [AMBER] About changes in frcmod.parmbsc0
Thomas Cheatham
(Sat Feb 06 2021 - 00:28:39 PST)
Re: [AMBER] About changes in frcmod.parmbsc0
David A Case
(Sat Feb 06 2021 - 05:25:31 PST)
[AMBER] RAMD simulation (Xiaodong)
吴晓东
(Sat Feb 06 2021 - 23:00:28 PST)
[AMBER] Fix the dihedral angle during the simulation
Rinsha Chk
(Sun Feb 07 2021 - 01:06:16 PST)
Re: [AMBER] Fix the dihedral angle during the simulation
David A Case
(Sun Feb 07 2021 - 05:46:06 PST)
Re: [AMBER] Fix the dihedral angle during the simulation
Rinsha Chk
(Sun Feb 07 2021 - 05:48:52 PST)
[AMBER] polarizable FF in amber18 or 20
Vaibhav Dixit
(Sun Feb 07 2021 - 02:01:37 PST)
Re: [AMBER] polarizable FF in amber18 or 20
David A Case
(Sun Feb 07 2021 - 07:34:01 PST)
[AMBER] CPPTRAJ cannot open RXSGLD trajectories out of the box
Charo del Genio
(Sun Feb 07 2021 - 05:59:33 PST)
Re: [AMBER] CPPTRAJ cannot open RXSGLD trajectories out of the box
Daniel Roe
(Sun Feb 07 2021 - 06:38:11 PST)
[AMBER] multi source calls in tleap
Alan
(Sun Feb 07 2021 - 11:50:12 PST)
Re: [AMBER] multi source calls in tleap
David A Case
(Mon Feb 08 2021 - 06:50:07 PST)
Re: [AMBER] multi source calls in tleap
Matias Machado
(Thu Feb 11 2021 - 05:52:23 PST)
Re: [AMBER] multi source calls in tleap
Alan
(Sun Feb 14 2021 - 23:45:30 PST)
Re: [AMBER] multi source calls in tleap
Matias Machado
(Mon Feb 22 2021 - 11:09:00 PST)
[AMBER] mdgx ipolQ charges of a charged residue
Luis Simon
(Mon Feb 08 2021 - 01:23:05 PST)
Re: [AMBER] Probmlems compiling under macOS
Gustaf Olsson
(Mon Feb 08 2021 - 02:26:48 PST)
Re: [AMBER] Probmlems compiling under macOS
David A Case
(Mon Feb 08 2021 - 06:58:30 PST)
Re: [AMBER] Probmlems compiling under macOS
Gustaf Olsson
(Mon Feb 08 2021 - 23:50:07 PST)
Re: [AMBER] Probmlems compiling under macOS
Gustaf Olsson
(Tue Feb 09 2021 - 00:17:36 PST)
Re: [AMBER] Probmlems compiling under macOS
David A Case
(Tue Feb 09 2021 - 05:30:57 PST)
Re: [AMBER] Probmlems compiling under macOS
Gustaf Olsson
(Tue Feb 09 2021 - 07:42:17 PST)
Re: [AMBER] Probmlems compiling under macOS
Gustaf Olsson
(Wed Feb 10 2021 - 02:32:47 PST)
[AMBER] TI with igb. = 6
Holly Freedman
(Mon Feb 08 2021 - 09:47:02 PST)
Re: [AMBER] CPPTRAJ - KMeans Value for K
Piotr Fajer
(Mon Feb 08 2021 - 10:15:33 PST)
Re: [AMBER] CPPTRAJ - KMeans Value for K
Christina Bergonzo
(Tue Feb 09 2021 - 05:45:22 PST)
[AMBER] IEEE_OVERFLOW_FLAG
Mudrovcic, Korana
(Tue Feb 09 2021 - 06:22:56 PST)
Re: [AMBER] IEEE_OVERFLOW_FLAG
David A Case
(Mon Feb 22 2021 - 04:56:33 PST)
Re: [AMBER] IEEE_OVERFLOW_FLAG
Åke Sandgren
(Mon Feb 22 2021 - 05:52:17 PST)
[AMBER] Preparation of i-Motif structures
Sruthi Sudhakar
(Tue Feb 09 2021 - 13:30:41 PST)
Re: [AMBER] Preparation of i-Motif structures
Petr Stadlbauer
(Wed Feb 10 2021 - 09:34:15 PST)
[AMBER] single strand RNA parameters
Jorge Iulek
(Wed Feb 10 2021 - 09:41:56 PST)
Re: [AMBER] single strand RNA parameters
Daniel Roe
(Thu Feb 11 2021 - 06:28:49 PST)
Re: [AMBER] single strand RNA parameters
Jiri Sponer
(Thu Feb 11 2021 - 07:39:45 PST)
Re: [AMBER] single strand RNA parameters
Jorge Iulek
(Thu Feb 11 2021 - 08:41:54 PST)
Re: [AMBER] single strand RNA parameters
Daniel Roe
(Thu Feb 11 2021 - 10:08:41 PST)
Re: [AMBER] single strand RNA parameters
Daniel Roe
(Thu Feb 11 2021 - 12:38:25 PST)
Re: [AMBER] single strand RNA parameters
Jorge Iulek
(Sat Feb 13 2021 - 01:59:39 PST)
Re: [AMBER] single strand RNA parameters
Jiri Sponer
(Thu Feb 11 2021 - 10:59:27 PST)
Re: [AMBER] single strand RNA parameters
Jorge Iulek
(Sat Feb 13 2021 - 02:03:10 PST)
[AMBER] maximum no of atoms for simulation
Pinky Mazumder
(Wed Feb 10 2021 - 14:11:14 PST)
Re: [AMBER] maximum no of atoms for simulation
Adrian Roitberg
(Wed Feb 10 2021 - 14:29:09 PST)
Re: [AMBER] maximum no of atoms for simulation
Pinky Mazumder
(Wed Feb 10 2021 - 15:01:44 PST)
[AMBER] Questions about loading FF02 and MMGBSA
Matthew Guberman-Pfeffer
(Wed Feb 10 2021 - 18:40:46 PST)
Re: [AMBER] Questions about loading FF02 and MMGBSA
David A Case
(Thu Feb 11 2021 - 04:42:14 PST)
[AMBER] Parameters for Iron Oxide
Matthew Guberman-Pfeffer
(Thu Feb 11 2021 - 02:42:10 PST)
Re: [AMBER] Parameters for Iron Oxide
Maria Nagan
(Fri Feb 12 2021 - 14:49:07 PST)
[AMBER] High value for force constant is acceptable?
Rinsha Chk
(Thu Feb 11 2021 - 03:50:58 PST)
Re: [AMBER] High value for force constant is acceptable?
David A Case
(Thu Feb 18 2021 - 05:25:37 PST)
Re: [AMBER] High value for force constant is acceptable?
Carlos Simmerling
(Thu Feb 18 2021 - 05:39:02 PST)
Re: [AMBER] High value for force constant is acceptable?
Rinsha Chk
(Thu Feb 18 2021 - 22:52:37 PST)
Re: [AMBER] High value for force constant is acceptable?
Karl Kirschner
(Fri Feb 19 2021 - 10:39:29 PST)
[AMBER] leap hangs on dihedral in frcmod?
Kenneth Huang
(Thu Feb 11 2021 - 14:08:58 PST)
Re: [AMBER] leap hangs on dihedral in frcmod?
Matias Machado
(Fri Feb 12 2021 - 04:13:31 PST)
Re: [AMBER] leap hangs on dihedral in frcmod?
Kenneth Huang
(Fri Feb 12 2021 - 14:09:22 PST)
[AMBER] Testing pmemd.cuda.MPI - how many failed file comparisons are innocuous?
Nikolay N. Kuzmich
(Fri Feb 12 2021 - 01:44:56 PST)
Re: [AMBER] Testing pmemd.cuda.MPI - how many failed file comparisons are innocuous?
David A Case
(Fri Feb 12 2021 - 04:07:53 PST)
Re: [AMBER] Testing pmemd.cuda.MPI - how many failed file comparisons are innocuous?
Nikolay N. Kuzmich
(Fri Feb 12 2021 - 08:57:35 PST)
[AMBER] Amber20 GPU plus PLUMED
Domenico Marson
(Fri Feb 12 2021 - 04:02:46 PST)
Re: [AMBER] Amber20 GPU plus PLUMED
David A Case
(Thu Feb 18 2021 - 05:24:04 PST)
[AMBER] Fwd: MMPBSA Error
Sadaf Rani
(Fri Feb 12 2021 - 05:13:17 PST)
[AMBER] tLeap, Fatal: Atom does not have a type
Alysia Mandato
(Fri Feb 12 2021 - 11:08:52 PST)
Re: [AMBER] tLeap, Fatal: Atom does not have a type
Kenneth Huang
(Fri Feb 12 2021 - 14:32:32 PST)
Re: [AMBER] tLeap, Fatal: Atom does not have a type
Maria Nagan
(Fri Feb 12 2021 - 14:41:58 PST)
Re: [AMBER] tLeap, Fatal: Atom does not have a type
Alysia Mandato
(Mon Feb 15 2021 - 13:17:10 PST)
Re: [AMBER] tLeap, Fatal: Atom does not have a type
Carlos Simmerling
(Mon Feb 15 2021 - 13:23:31 PST)
Re: [AMBER] tLeap, Fatal: Atom does not have a type
David A Case
(Tue Feb 16 2021 - 05:13:40 PST)
Re: [AMBER] tLeap, Fatal: Atom does not have a type
raissa.conceicao.bol.com.br
(Tue Feb 16 2021 - 03:40:18 PST)
[AMBER] Using divalent ions in LEaP
Sam Walsworth (Researcher)
(Fri Feb 12 2021 - 13:30:36 PST)
Re: [AMBER] Using divalent ions in LEaP
Maria Nagan
(Fri Feb 12 2021 - 13:45:32 PST)
Re: [AMBER] Using divalent ions in LEaP
Sam Walsworth (Researcher)
(Fri Feb 12 2021 - 14:04:26 PST)
Re: [AMBER] Using divalent ions in LEaP
Maria Nagan
(Fri Feb 12 2021 - 14:14:44 PST)
Re: [AMBER] Using divalent ions in LEaP
Kenneth Huang
(Fri Feb 12 2021 - 14:23:30 PST)
Re: [AMBER] Using divalent ions in LEaP
David A Case
(Sat Feb 13 2021 - 06:10:55 PST)
[AMBER] Error while setting up constant pH MD simulations
Yashraj Kulkarni
(Sat Feb 13 2021 - 06:55:57 PST)
Re: [AMBER] OPC monovalent ion parameters
Cavender, Chapin
(Sat Feb 13 2021 - 11:50:31 PST)
Re: [AMBER] OPC monovalent ion parameters
Pengfei Li
(Sat Feb 13 2021 - 15:58:03 PST)
Re: [AMBER] OPC monovalent ion parameters
Thomas Cheatham
(Sat Feb 13 2021 - 20:33:41 PST)
Re: [AMBER] OPC monovalent ion parameters
Pengfei Li
(Mon Feb 15 2021 - 08:54:28 PST)
Re: [AMBER] OPC monovalent ion parameters
Matias Machado
(Mon Feb 22 2021 - 11:16:46 PST)
[AMBER] Disparities between dG solv from GB and PB Models
mish
(Sat Feb 13 2021 - 13:55:33 PST)
Re: [AMBER] Disparities between dG solv from GB and PB Models
Ray Luo
(Sat Feb 13 2021 - 14:21:27 PST)
Re: [AMBER] Disparities between dG solv from GB and PB Models
mish
(Sat Feb 13 2021 - 15:23:24 PST)
[AMBER] Altering ligand positions in Xleap
Sruthi Sudhakar
(Tue Feb 16 2021 - 02:44:10 PST)
Re: [AMBER] Altering ligand positions in Xleap
David A Case
(Tue Feb 16 2021 - 05:17:44 PST)
Re: [AMBER] Altering ligand positions in Xleap
Gordon Richard Chalmers
(Tue Feb 16 2021 - 05:20:46 PST)
[AMBER] Membrane protein-ligand simulation - application of multiple FF - compatibility and reliability
Prasanth G, Research Scholar
(Tue Feb 16 2021 - 09:49:09 PST)
Re: [AMBER] Membrane protein-ligand simulation - application of multiple FF - compatibility and reliability
Matias Machado
(Mon Feb 22 2021 - 17:16:54 PST)
[AMBER] error with AMBER installation
Mohammad Alaraby
(Wed Feb 17 2021 - 04:50:46 PST)
Re: [AMBER] error with AMBER installation
David A Case
(Wed Feb 17 2021 - 11:20:12 PST)
[AMBER] theoretical doubt about TI
Gabriel Jara
(Wed Feb 17 2021 - 05:54:14 PST)
Re: [AMBER] Help with installation
David A Case
(Thu Feb 18 2021 - 05:16:32 PST)
[AMBER] Making sense of tip3p.frcmod
Paul, Austin
(Thu Feb 18 2021 - 16:18:12 PST)
Re: [AMBER] Making sense of tip3p.frcmod
David A Case
(Thu Feb 18 2021 - 18:24:39 PST)
[AMBER] GaMD output (gamd.log) file analysis
jacob wick
(Fri Feb 19 2021 - 01:08:20 PST)
[AMBER] Fwd: GaMD output (gamd.log) file analysis
jacob wick
(Sun Feb 21 2021 - 00:51:31 PST)
[AMBER] query regarding heme forcefield parameters
Patil Pranita Uttamrao
(Fri Feb 19 2021 - 02:07:27 PST)
Re: [AMBER] query regarding heme forcefield parameters
David A Case
(Fri Feb 19 2021 - 07:38:35 PST)
[AMBER] Thermodynamic integration for protein-protein interactions
WW
(Fri Feb 19 2021 - 06:35:25 PST)
Re: [AMBER] Thermodynamic integration for protein-protein interactions
Carlos Simmerling
(Fri Feb 19 2021 - 07:30:49 PST)
Re: [AMBER] Thermodynamic integration for protein-protein interactions
David A Case
(Fri Feb 19 2021 - 07:33:25 PST)
Re: [AMBER] Thermodynamic integration for protein-protein interactions
neildancer.sina.com
(Fri Feb 19 2021 - 08:02:29 PST)
Re: [AMBER] Thermodynamic integration for protein-protein interactions
David A Case
(Mon Feb 22 2021 - 04:54:33 PST)
Re: [AMBER] Thermodynamic integration for protein-protein interactions
neildancer.sina.com
(Mon Feb 22 2021 - 05:32:14 PST)
[AMBER] tip3p water model in amber14
Swisher, Justin S
(Fri Feb 19 2021 - 08:48:24 PST)
Re: [AMBER] tip3p water model in amber14
Carlos Simmerling
(Fri Feb 19 2021 - 09:33:45 PST)
[AMBER] Interaction energy by MM-PBSA for a superantigen with important Zn(II) center
SATYAJIT KHATUA
(Fri Feb 19 2021 - 09:56:53 PST)
Re: [AMBER] Interaction energy by MM-PBSA for a superantigen with important Zn(II) center
David A Case
(Sat Feb 20 2021 - 06:24:25 PST)
Re: [AMBER] Interaction energy by MM-PBSA for a superantigen with important Zn(II) center
SATYAJIT KHATUA
(Tue Feb 23 2021 - 21:20:23 PST)
[AMBER] MAXPR error in sander sp job
Vaibhav Dixit
(Fri Feb 19 2021 - 20:06:57 PST)
Re: [AMBER] MAXPR error in sander sp job
Vaibhav Dixit
(Sat Feb 20 2021 - 05:10:05 PST)
Re: [AMBER] MAXPR error in sander sp job
David A Case
(Sat Feb 20 2021 - 06:16:08 PST)
Re: [AMBER] MAXPR error in sander sp job
Vaibhav Dixit
(Sat Feb 20 2021 - 06:49:52 PST)
Re: [AMBER] MAXPR error in sander sp job
David A Case
(Sat Feb 20 2021 - 14:09:26 PST)
Re: [AMBER] MAXPR error in sander sp job
Vaibhav Dixit
(Sat Feb 20 2021 - 15:31:38 PST)
Re: [AMBER] MAXPR error in sander sp job
Carlos Simmerling
(Sat Feb 20 2021 - 15:56:24 PST)
Re: [AMBER] MAXPR error in sander sp job
Vaibhav Dixit
(Sat Feb 20 2021 - 16:26:31 PST)
Re: [AMBER] MAXPR error in sander sp job
Vaibhav Dixit
(Sat Feb 20 2021 - 22:58:02 PST)
Re: [AMBER] MAXPR error in sander sp job
Carlos Simmerling
(Sun Feb 21 2021 - 04:08:13 PST)
Re: [AMBER] MAXPR error in sander sp job
Vaibhav Dixit
(Mon Feb 22 2021 - 02:36:40 PST)
Re: [AMBER] MAXPR error in sander sp job
Carlos Simmerling
(Mon Feb 22 2021 - 03:48:01 PST)
Re: [AMBER] MAXPR error in sander sp job
Vaibhav Dixit
(Mon Feb 22 2021 - 03:58:36 PST)
Re: [AMBER] MAXPR error in sander sp job
David A Case
(Mon Feb 22 2021 - 04:50:26 PST)
Re: [AMBER] MAXPR error in sander sp job
Vaibhav Dixit
(Mon Feb 22 2021 - 07:30:42 PST)
Re: [AMBER] MAXPR error in sander sp job
David A Case
(Mon Feb 22 2021 - 10:13:13 PST)
Re: [AMBER] MAXPR error in sander sp job
Vaibhav Dixit
(Mon Feb 22 2021 - 20:50:12 PST)
[AMBER] Stacking energy calculation
Athena N
(Sat Feb 20 2021 - 00:52:04 PST)
[AMBER] Why do trajectories get corrupted?
Victoria E Hill
(Sat Feb 20 2021 - 08:36:44 PST)
Re: [AMBER] Why do trajectories get corrupted?
Maria Nagan
(Sat Feb 20 2021 - 09:09:34 PST)
Re: [AMBER] Why do trajectories get corrupted?
Victoria E Hill
(Sun Feb 21 2021 - 04:58:10 PST)
Re: [AMBER] Why do trajectories get corrupted?
Carlos Simmerling
(Sun Feb 21 2021 - 05:17:40 PST)
Re: [AMBER] Why do trajectories get corrupted?
Victoria E Hill
(Sun Feb 21 2021 - 05:36:06 PST)
Re: [AMBER] Why do trajectories get corrupted?
Carlos Simmerling
(Sun Feb 21 2021 - 05:51:19 PST)
Re: [AMBER] Why do trajectories get corrupted?
Victoria E Hill
(Sun Feb 21 2021 - 06:12:56 PST)
Re: [AMBER] Why do trajectories get corrupted?
Carlos Simmerling
(Sun Feb 21 2021 - 08:31:42 PST)
Re: [AMBER] Why do trajectories get corrupted?
Daniel Roe
(Tue Feb 23 2021 - 11:26:33 PST)
[AMBER] Sufficiently equilibrated or not
Delwakkada Liyanage, Senal Dinuka
(Sat Feb 20 2021 - 11:17:14 PST)
Re: [AMBER] Sufficiently equilibrated or not
Lachele Foley
(Sat Feb 20 2021 - 11:41:24 PST)
Re: [AMBER] Sufficiently equilibrated or not
Delwakkada Liyanage, Senal Dinuka
(Sat Feb 20 2021 - 11:46:01 PST)
Re: [AMBER] Sufficiently equilibrated or not
Lachele Foley
(Sat Feb 20 2021 - 11:55:15 PST)
Re: [AMBER] Sufficiently equilibrated or not
Delwakkada Liyanage, Senal Dinuka
(Sat Feb 20 2021 - 11:58:31 PST)
Re: [AMBER] Sufficiently equilibrated or not
Lachele Foley
(Sat Feb 20 2021 - 13:30:56 PST)
Re: [AMBER] Sufficiently equilibrated or not
Delwakkada Liyanage, Senal Dinuka
(Sat Feb 20 2021 - 18:33:52 PST)
Re: [AMBER] Sufficiently equilibrated or not
Gordon Richard Chalmers
(Sat Feb 20 2021 - 22:24:29 PST)
Re: [AMBER] Sufficiently equilibrated or not
Lachele Foley
(Sat Feb 20 2021 - 23:04:17 PST)
Re: [AMBER] Sufficiently equilibrated or not
Carlos Simmerling
(Sun Feb 21 2021 - 05:58:27 PST)
Re: [AMBER] Sufficiently equilibrated or not
Gordon Richard Chalmers
(Sun Feb 21 2021 - 08:12:59 PST)
Re: [AMBER] Sufficiently equilibrated or not
Carlos Simmerling
(Sun Feb 21 2021 - 08:29:37 PST)
Re: [AMBER] Sufficiently equilibrated or not
Gordon Richard Chalmers
(Sun Feb 21 2021 - 09:00:45 PST)
Re: [AMBER] Sufficiently equilibrated or not
Delwakkada Liyanage, Senal Dinuka
(Mon Feb 22 2021 - 09:27:01 PST)
Re: [AMBER] Sufficiently equilibrated or not
Carlos Simmerling
(Mon Feb 22 2021 - 10:00:49 PST)
Re: [AMBER] Sufficiently equilibrated or not
Brian Radak
(Sun Feb 21 2021 - 08:29:07 PST)
Re: [AMBER] Sufficiently equilibrated or not
Carlos Simmerling
(Sat Feb 20 2021 - 12:35:24 PST)
[AMBER] case studies of MD based drug discovery
Vaibhav Dixit
(Sun Feb 21 2021 - 05:05:28 PST)
[AMBER] Odd number of electrons
divyabharathi korlepara
(Mon Feb 22 2021 - 05:57:27 PST)
Re: [AMBER] Odd number of electrons
David A Case
(Mon Feb 22 2021 - 10:19:50 PST)
Re: [AMBER] Odd number of electrons
divyabharathi korlepara
(Tue Feb 23 2021 - 20:43:25 PST)
Re: [AMBER] Odd number of electrons
Gustaf Olsson
(Wed Feb 24 2021 - 00:08:47 PST)
[AMBER] Acpype error: Timed out process killed
Shilpa Gupta
(Mon Feb 22 2021 - 07:24:04 PST)
Re: [AMBER] Acpype error: Timed out process killed
David A Case
(Mon Feb 22 2021 - 10:22:21 PST)
Re: [AMBER] Acpype error: Timed out process killed
Alan
(Mon Feb 22 2021 - 12:18:46 PST)
[AMBER] Regarding restarting of Gaussian Accelerated MD.
Sruthi Sudhakar
(Mon Feb 22 2021 - 20:39:04 PST)
[AMBER] Problem with pmemd.MPI
Pranjal Bhuyan
(Tue Feb 23 2021 - 02:36:56 PST)
Re: [AMBER] Problem with pmemd.MPI
David A Case
(Tue Feb 23 2021 - 04:41:57 PST)
Re: [AMBER] Problem with pmemd.MPI
Pranjal Bhuyan
(Tue Feb 23 2021 - 21:45:21 PST)
Re: [AMBER] Problem with pmemd.MPI
David A Case
(Wed Feb 24 2021 - 04:24:52 PST)
[AMBER] Multiple Harmonic Restraints
Li,Haoxi
(Tue Feb 23 2021 - 08:44:27 PST)
Re: [AMBER] Multiple Harmonic Restraints
Thomas Gaillard
(Tue Feb 23 2021 - 09:20:41 PST)
[AMBER] How to recompile AmberTools
Matthew Guberman-Pfeffer
(Tue Feb 23 2021 - 21:41:46 PST)
Re: [AMBER] How to recompile AmberTools
Gustaf Olsson
(Wed Feb 24 2021 - 00:11:14 PST)
[AMBER] MDGX charge fitting with some charges fixed or restrained
Luis Simon
(Wed Feb 24 2021 - 00:34:30 PST)
Re: [AMBER] [lsimon.usal.es: MDGX charge fitting with some charges fixed or restrained]
David Cerutti
(Wed Feb 24 2021 - 05:25:12 PST)
Last message date
:
Wed Feb 24 2021 - 05:30:03 PST
Archived on
: Wed Feb 24 2021 - 06:01:32 PST
249 messages
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