Hi,
How exactly are you invoking cpptraj? Also, try renaming cpptraj.log
to something else (e.g. 'mv cpptraj.log cpptraj.log.backup') and then
try again. If that works, please send me off-list the problematic
cpptraj.log file.
-Dan
On Thu, Feb 25, 2021 at 1:12 PM Cato, Lee <michael.lee.cato.emory.edu> wrote:
>
> I am having an issue with Amber20 installation. I have applied all patches, all tests have passed, and simulations as well as programs such as antechamber work fine. However, when I try to use cpptraj, I get this output:
>
> CPPTRAJ: Trajectory Analysis. V4.25.6
> ___ ___ ___ ___
> | \/ | \/ | \/ |
> _|_/\_|_/\_|_/\_|_
>
> | Date/time: 02/25/21 13:00:05
> | Available memory: 977.785 MB
>
> Loading previous history from log 'cpptraj.log'
> Segmentation fault (core dumped)
>
> I have tried everything from reinstalling without update2 (cpptraj patch), reinstalling with all patches, and I have tried to debug the file with no avail.
>
> Note that if I move the executable cpptraj file from a previous build (amber16), I am able to run cpptraj fine.
>
> Can you please help with this????
>
> Best,
> Cato
>
> --
> Ph.D. Candidate
> Biochemistry, Cell, and Developmental Biology Program
> Ortlund Lab
> Emory University
>
> ________________________________
>
> This e-mail message (including any attachments) is for the sole use of
> the intended recipient(s) and may contain confidential and privileged
> information. If the reader of this message is not the intended
> recipient, you are hereby notified that any dissemination, distribution
> or copying of this message (including any attachments) is strictly
> prohibited.
>
> If you have received this message in error, please contact
> the sender by reply e-mail message and destroy all copies of the
> original message (including attachments).
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Feb 25 2021 - 11:00:02 PST
