Amber Archive Feb 2021: by subject

[AMBER] [lsimon.usal.es: MDGX charge fitting with some charges fixed or restrained]
- Luis Simon (Wed Feb 24 2021 - 09:20:24 PST)
- David Cerutti (Wed Feb 24 2021 - 05:25:12 PST)
[AMBER] About changes in frcmod.parmbsc0
- David A Case (Sat Feb 06 2021 - 05:25:31 PST)
- Thomas Cheatham (Sat Feb 06 2021 - 00:28:39 PST)
- Alan (Sat Feb 06 2021 - 00:12:55 PST)
[AMBER] Acpype error: Timed out process killed
- Alan (Mon Feb 22 2021 - 12:18:46 PST)
- David A Case (Mon Feb 22 2021 - 10:22:21 PST)
- Shilpa Gupta (Mon Feb 22 2021 - 07:24:04 PST)
[AMBER] Altering ligand positions in Xleap
- Gordon Richard Chalmers (Tue Feb 16 2021 - 05:20:46 PST)
- David A Case (Tue Feb 16 2021 - 05:17:44 PST)
- Sruthi Sudhakar (Tue Feb 16 2021 - 02:44:10 PST)
[AMBER] AMBER HREMD replica trajectory
- Daniel Roe (Wed Feb 03 2021 - 06:46:39 PST)
- Richard Kullmann (Wed Feb 03 2021 - 06:34:11 PST)
[AMBER] Amber18 + Ambertools20
- David A Case (Thu Feb 25 2021 - 08:49:15 PST)
- Rafał Bachorz (Thu Feb 25 2021 - 06:04:39 PST)
[AMBER] Amber20 GPU plus PLUMED
- David A Case (Thu Feb 18 2021 - 05:24:04 PST)
- Domenico Marson (Fri Feb 12 2021 - 04:02:46 PST)
[AMBER] AmberTools20 parallel test errors
- David A Case (Thu Feb 25 2021 - 04:20:18 PST)
- Alain Arsene (Thu Feb 25 2021 - 02:53:50 PST)
[AMBER] Apply Lennar-Jones potential between small molecules
- Ming Tang (Thu Feb 25 2021 - 14:25:49 PST)
- Carlos Simmerling (Thu Feb 25 2021 - 13:32:10 PST)
- Ming Tang (Thu Feb 25 2021 - 13:17:00 PST)
- Carlos Simmerling (Thu Feb 25 2021 - 09:15:54 PST)
- Carlos Simmerling (Thu Feb 25 2021 - 09:01:46 PST)
- Ming Tang (Wed Feb 24 2021 - 14:51:46 PST)
[AMBER] atom number difference in topology and simulated trajectory
- Elvis A F Martis (Sun Feb 28 2021 - 03:01:27 PST)
- Ayesha Fatima (Sun Feb 28 2021 - 01:38:34 PST)
- Elvis A F Martis (Sat Feb 27 2021 - 23:07:30 PST)
- Ayesha Fatima (Sat Feb 27 2021 - 22:56:56 PST)
- Elvis A F Martis (Sat Feb 27 2021 - 03:26:21 PST)
- Ayesha Fatima (Sat Feb 27 2021 - 02:38:36 PST)
- Elvis A F Martis (Sat Feb 27 2021 - 01:46:44 PST)
- Ayesha Fatima (Sat Feb 27 2021 - 00:10:20 PST)
[AMBER] Bug in the Mol2 format: space converted into a new oxygen atom
- David A Case (Mon Feb 22 2021 - 05:02:55 PST)
- Junmei Wang (Mon Feb 08 2021 - 06:26:44 PST)
- liu junjun (Thu Feb 04 2021 - 12:22:25 PST)
[AMBER] Calculating forces
- Click, Timothy Howard (Fri Feb 26 2021 - 07:27:20 PST)
- Daniel Roe (Thu Feb 25 2021 - 02:32:52 PST)
[AMBER] Calculating pairwise RMSD of two proteins
- Daniel Roe (Fri Feb 26 2021 - 12:36:12 PST)
- Sadaf Rani (Fri Feb 26 2021 - 10:31:20 PST)
[AMBER] case studies of MD based drug discovery
- Vaibhav Dixit (Sun Feb 21 2021 - 05:05:28 PST)
[AMBER] configure_mpich error
- Nikolay N. Kuzmich (Tue Feb 02 2021 - 08:29:49 PST)
- David A Case (Mon Feb 01 2021 - 04:47:52 PST)
- Nikolay N. Kuzmich (Mon Feb 01 2021 - 03:36:23 PST)
[AMBER] CPPTRAJ - KMeans Value for K
- Christina Bergonzo (Tue Feb 09 2021 - 05:45:22 PST)
- Piotr Fajer (Mon Feb 08 2021 - 10:15:33 PST)
[AMBER] CPPTRAJ cannot open RXSGLD trajectories out of the box
- Daniel Roe (Sun Feb 07 2021 - 06:38:11 PST)
- Charo del Genio (Sun Feb 07 2021 - 05:59:33 PST)
[AMBER] cpptraj CMAP flag issue with charmm-gui parm7 files
- Daniel Roe (Fri Feb 26 2021 - 17:50:17 PST)
- Wesley Michael Botello-Smith (Fri Feb 26 2021 - 13:40:53 PST)
[AMBER] CPPTRAJ mindist comand
- Daniel Roe (Wed Feb 24 2021 - 04:15:26 PST)
- Richard Kullmann (Wed Feb 24 2021 - 03:07:41 PST)
[AMBER] CUDE upgrade question and AMBER
- Seibold, Steve Allan (Thu Feb 04 2021 - 10:00:30 PST)
[AMBER] curiosity about sander reading a traj being written by GPU code
- Vaibhav Dixit (Wed Feb 10 2021 - 02:51:53 PST)
- Vaibhav Dixit (Wed Feb 10 2021 - 02:41:39 PST)
- Kenneth Huang (Tue Feb 09 2021 - 08:15:35 PST)
- Adrian Roitberg (Tue Feb 09 2021 - 07:37:35 PST)
- Vaibhav Dixit (Tue Feb 09 2021 - 04:14:06 PST)
- Carlos Simmerling (Tue Feb 09 2021 - 03:35:27 PST)
- Vaibhav Dixit (Mon Feb 08 2021 - 20:39:57 PST)
- Vaibhav Dixit (Sat Feb 06 2021 - 05:15:31 PST)
- Vaibhav Dixit (Fri Feb 05 2021 - 08:39:10 PST)
[AMBER] decompose running error
- Nisha Amarnath Jonniya (Mon Feb 08 2021 - 21:31:45 PST)
- Nisha Amarnath Jonniya (Mon Feb 08 2021 - 21:25:41 PST)
- David A Case (Fri Feb 05 2021 - 05:45:06 PST)
- Nisha Amarnath Jonniya (Thu Feb 04 2021 - 22:23:23 PST)
[AMBER] dimer shifts under NPT ensemble
- Qinghua Liao (Fri Feb 26 2021 - 15:25:49 PST)
- Qinghua Liao (Fri Feb 26 2021 - 14:58:29 PST)
- Thomas Gaillard (Fri Feb 26 2021 - 04:41:54 PST)
- Qinghua Liao (Thu Feb 25 2021 - 23:59:59 PST)
- Qinghua Liao (Thu Feb 25 2021 - 23:31:16 PST)
- Thomas Cheatham (Thu Feb 25 2021 - 19:44:07 PST)
- David A Case (Thu Feb 25 2021 - 18:02:24 PST)
- Qinghua Liao (Thu Feb 25 2021 - 16:04:23 PST)
[AMBER] Disparities between dG solv from GB and PB Models
- mish (Sat Feb 13 2021 - 15:23:24 PST)
- Ray Luo (Sat Feb 13 2021 - 14:21:27 PST)
- mish (Sat Feb 13 2021 - 13:55:33 PST)
[AMBER] erro free energy calculation
- David A Case (Mon Feb 01 2021 - 04:55:18 PST)
- Renato Araujo (Mon Feb 01 2021 - 03:56:21 PST)
[AMBER] error while building Amber20 with Intel + CUDA
- Susan Chacko (Tue Feb 02 2021 - 13:33:46 PST)
- David A Case (Tue Feb 02 2021 - 13:27:40 PST)
- Susan Chacko (Tue Feb 02 2021 - 12:20:43 PST)
[AMBER] Error while setting up constant pH MD simulations
- Jason Swails (Fri Feb 26 2021 - 05:44:50 PST)
- Yashraj Kulkarni (Sat Feb 13 2021 - 06:55:57 PST)
[AMBER] error with AMBER installation
- David A Case (Wed Feb 17 2021 - 11:20:12 PST)
- Mohammad Alaraby (Wed Feb 17 2021 - 04:50:46 PST)
[AMBER] External electric fields cannot be used when npt > 0
- 李明玉 (Fri Feb 05 2021 - 09:19:49 PST)
[AMBER] Fix the dihedral angle during the simulation
- Rinsha Chk (Sun Feb 07 2021 - 05:48:52 PST)
- David A Case (Sun Feb 07 2021 - 05:46:06 PST)
- Rinsha Chk (Sun Feb 07 2021 - 01:06:16 PST)
[AMBER] Found bug in sander in restarting SGLD replica exchange runs
- Carlos Simmerling (Tue Feb 02 2021 - 17:03:28 PST)
[AMBER] Fwd: GaMD output (gamd.log) file analysis
- jacob wick (Sun Feb 21 2021 - 00:51:31 PST)
[AMBER] Fwd: MMPBSA Error
- Sadaf Rani (Fri Feb 12 2021 - 05:13:17 PST)
[AMBER] Fwd: Prepare pbd file modified cyclodextrin
- Игорь Злотников (Sun Feb 14 2021 - 04:16:16 PST)
[AMBER] Fwd: unreadable *.mdcrd
- Elvis A F Martis (Fri Feb 05 2021 - 17:01:30 PST)
- Tomasz Miernik (Fri Feb 05 2021 - 14:07:04 PST)
- David A Case (Fri Feb 05 2021 - 05:51:40 PST)
[AMBER] GaMD output (gamd.log) file analysis
- jacob wick (Fri Feb 19 2021 - 01:08:20 PST)
[AMBER] GPU power usage drop for igb = 8 compared to igb = 2
- Carlos Simmerling (Wed Feb 03 2021 - 15:19:47 PST)
- Demian Riccardi (Wed Feb 03 2021 - 14:48:45 PST)
[AMBER] GPU TI PROBLEM
- accuratefreeenergy.gmail.com (Fri Feb 26 2021 - 10:07:32 PST)
- Umut Çağan Uçar (Fri Feb 26 2021 - 00:46:09 PST)
- accuratefreeenergy.gmail.com (Thu Feb 25 2021 - 06:12:48 PST)
- Umut Çağan Uçar (Thu Feb 25 2021 - 05:36:25 PST)
[AMBER] help with cpptraj error (segmentation fault)
- Daniel Roe (Thu Feb 25 2021 - 10:32:28 PST)
- Cato, Lee (Thu Feb 25 2021 - 10:12:20 PST)
[AMBER] Help with installation
- David A Case (Thu Feb 18 2021 - 05:16:32 PST)
[AMBER] High value for force constant is acceptable?
- Karl Kirschner (Fri Feb 19 2021 - 10:39:29 PST)
- Rinsha Chk (Thu Feb 18 2021 - 22:52:37 PST)
- Carlos Simmerling (Thu Feb 18 2021 - 05:39:02 PST)
- David A Case (Thu Feb 18 2021 - 05:25:37 PST)
- Rinsha Chk (Thu Feb 11 2021 - 03:50:58 PST)
[AMBER] how does tleap choose missing side chain conformations
- Vaibhav Dixit (Tue Feb 02 2021 - 03:07:48 PST)
- Carlos Simmerling (Mon Feb 01 2021 - 03:23:01 PST)
- Vaibhav Dixit (Sun Jan 31 2021 - 19:51:51 PST)
[AMBER] How to recompile AmberTools
- Gustaf Olsson (Thu Feb 25 2021 - 00:02:54 PST)
- David A Case (Wed Feb 24 2021 - 13:06:38 PST)
- Matthew Guberman-Pfeffer (Wed Feb 24 2021 - 12:04:58 PST)
- Gustaf Olsson (Wed Feb 24 2021 - 00:11:14 PST)
- Matthew Guberman-Pfeffer (Tue Feb 23 2021 - 21:41:46 PST)
[AMBER] Hydrogen bond analysis tutorial
- Maria Nagan (Tue Feb 02 2021 - 11:21:07 PST)
- Renato Araujo (Tue Feb 02 2021 - 11:13:29 PST)
[AMBER] IEEE_OVERFLOW_FLAG
- Åke Sandgren (Mon Feb 22 2021 - 05:52:17 PST)
- David A Case (Mon Feb 22 2021 - 04:56:33 PST)
- Mudrovcic, Korana (Tue Feb 09 2021 - 06:22:56 PST)
[AMBER] Interaction energy by MM-PBSA for a superantigen with important Zn(II) center
- SATYAJIT KHATUA (Tue Feb 23 2021 - 21:20:23 PST)
- David A Case (Sat Feb 20 2021 - 06:24:25 PST)
- SATYAJIT KHATUA (Fri Feb 19 2021 - 09:56:53 PST)
[AMBER] leap hangs on dihedral in frcmod?
- Kenneth Huang (Fri Feb 12 2021 - 14:09:22 PST)
- Matias Machado (Fri Feb 12 2021 - 04:13:31 PST)
- Kenneth Huang (Thu Feb 11 2021 - 14:08:58 PST)
[AMBER] Making sense of tip3p.frcmod
- David A Case (Thu Feb 18 2021 - 18:24:39 PST)
- Paul, Austin (Thu Feb 18 2021 - 16:18:12 PST)
[AMBER] max pairlist cutoff must be less than unit cell max sphere radius!
- Carlos Simmerling (Mon Feb 01 2021 - 15:27:34 PST)
- Pinky Mazumder (Mon Feb 01 2021 - 14:27:11 PST)
[AMBER] maximum no of atoms for simulation
- Pinky Mazumder (Wed Feb 10 2021 - 15:01:44 PST)
- Adrian Roitberg (Wed Feb 10 2021 - 14:29:09 PST)
- Pinky Mazumder (Wed Feb 10 2021 - 14:11:14 PST)
[AMBER] MAXPR error in sander sp job
- Vaibhav Dixit (Mon Feb 22 2021 - 20:50:12 PST)
- David A Case (Mon Feb 22 2021 - 10:13:13 PST)
- Vaibhav Dixit (Mon Feb 22 2021 - 07:30:42 PST)
- David A Case (Mon Feb 22 2021 - 04:50:26 PST)
- Vaibhav Dixit (Mon Feb 22 2021 - 03:58:36 PST)
- Carlos Simmerling (Mon Feb 22 2021 - 03:48:01 PST)
- Vaibhav Dixit (Mon Feb 22 2021 - 02:36:40 PST)
- Carlos Simmerling (Sun Feb 21 2021 - 04:08:13 PST)
- Vaibhav Dixit (Sat Feb 20 2021 - 22:58:02 PST)
- Vaibhav Dixit (Sat Feb 20 2021 - 16:26:31 PST)
- Carlos Simmerling (Sat Feb 20 2021 - 15:56:24 PST)
- Vaibhav Dixit (Sat Feb 20 2021 - 15:31:38 PST)
- David A Case (Sat Feb 20 2021 - 14:09:26 PST)
- Vaibhav Dixit (Sat Feb 20 2021 - 06:49:52 PST)
- David A Case (Sat Feb 20 2021 - 06:16:08 PST)
- Vaibhav Dixit (Sat Feb 20 2021 - 05:10:05 PST)
- Vaibhav Dixit (Fri Feb 19 2021 - 20:06:57 PST)
[AMBER] MDGX charge fitting with some charges fixed or restrained
- Luis Simon (Wed Feb 24 2021 - 00:34:30 PST)
[AMBER] mdgx ipolQ charges of a charged residue
- Luis Simon (Mon Feb 08 2021 - 01:23:05 PST)
[AMBER] Membrane protein-ligand simulation - application of multiple FF - compatibility and reliability
- Matias Machado (Mon Feb 22 2021 - 17:16:54 PST)
- Prasanth G, Research Scholar (Tue Feb 16 2021 - 09:49:09 PST)
[AMBER] MMPBSA, signal SIGSEGV failure
- Ray Luo (Thu Feb 25 2021 - 09:09:36 PST)
- Matthew Guberman-Pfeffer (Thu Feb 25 2021 - 08:11:29 PST)
[AMBER] MMPBSA.py Error: Could not import Amber Python modules
- Vitor Rabelo (Thu Feb 04 2021 - 11:08:49 PST)
[AMBER] ModuleNotFoundError: No module named 'MMPBSA_mods'
- David A Case (Wed Feb 03 2021 - 05:47:56 PST)
- Ch Bilal (Wed Feb 03 2021 - 00:35:26 PST)
[AMBER] Molecule volume in cpptraj?
- Gustavo Seabra (Fri Feb 26 2021 - 13:01:02 PST)
- Daniel Roe (Fri Feb 26 2021 - 06:44:45 PST)
- Gustavo Seabra (Thu Feb 25 2021 - 10:56:10 PST)
[AMBER] multi source calls in tleap
- Matias Machado (Mon Feb 22 2021 - 11:09:00 PST)
- Alan (Sun Feb 14 2021 - 23:45:30 PST)
- Matias Machado (Thu Feb 11 2021 - 05:52:23 PST)
- David A Case (Mon Feb 08 2021 - 06:50:07 PST)
- Alan (Sun Feb 07 2021 - 11:50:12 PST)
[AMBER] Multiple Harmonic Restraints
- Thomas Gaillard (Tue Feb 23 2021 - 09:20:41 PST)
- Li,Haoxi (Tue Feb 23 2021 - 08:44:27 PST)
[AMBER] Non zero ligand warning
- Ayesha Fatima (Sun Jan 31 2021 - 08:41:24 PST)
- Ayesha Fatima (Sun Jan 31 2021 - 08:12:55 PST)
[AMBER] Nudged Elastic Band solvent choice and initial heating problem
- Carlos Simmerling (Wed Feb 03 2021 - 09:17:26 PST)
- 李明玉 (Wed Feb 03 2021 - 09:01:09 PST)
- David A Case (Wed Feb 03 2021 - 06:00:45 PST)
- Carlos Simmerling (Wed Feb 03 2021 - 05:17:30 PST)
- 李明玉 (Wed Feb 03 2021 - 04:12:45 PST)
[AMBER] Odd number of electrons
- Gustaf Olsson (Wed Feb 24 2021 - 00:08:47 PST)
- divyabharathi korlepara (Tue Feb 23 2021 - 20:43:25 PST)
- David A Case (Mon Feb 22 2021 - 10:19:50 PST)
- divyabharathi korlepara (Mon Feb 22 2021 - 05:57:27 PST)
[AMBER] OPC monovalent ion parameters
- Pengfei Li (Fri Feb 26 2021 - 15:08:06 PST)
- Matias Machado (Mon Feb 22 2021 - 11:16:46 PST)
- Pengfei Li (Mon Feb 15 2021 - 08:54:28 PST)
- Thomas Cheatham (Sat Feb 13 2021 - 20:33:41 PST)
- Pengfei Li (Sat Feb 13 2021 - 15:58:03 PST)
- Cavender, Chapin (Sat Feb 13 2021 - 11:50:31 PST)
[AMBER] Parameters for Iron Oxide
- Maria Nagan (Fri Feb 12 2021 - 14:49:07 PST)
- Matthew Guberman-Pfeffer (Thu Feb 11 2021 - 02:42:10 PST)
[AMBER] polarizable FF in amber18 or 20
- David A Case (Sun Feb 07 2021 - 07:34:01 PST)
- Vaibhav Dixit (Sun Feb 07 2021 - 02:01:37 PST)
[AMBER] Preparation of i-Motif structures
- Petr Stadlbauer (Wed Feb 10 2021 - 09:34:15 PST)
- Sruthi Sudhakar (Tue Feb 09 2021 - 13:30:41 PST)
[AMBER] Prepare pbd file modified cyclodextrin
- Игорь Злотников (Thu Feb 04 2021 - 00:52:45 PST)
[AMBER] Prmtop missing resid and resname info
- Kenneth Huang (Fri Feb 05 2021 - 07:21:00 PST)
- Carlos Simmerling (Fri Feb 05 2021 - 03:38:44 PST)
- Violeta Burns Casamayor (Fri Feb 05 2021 - 01:55:31 PST)
[AMBER] problem deriving implicit polarised charges charges with mdgx
- Luis Simon (Sun Feb 07 2021 - 13:29:15 PST)
- Luis Simon (Fri Feb 05 2021 - 13:10:59 PST)
[AMBER] Problem with pmemd.MPI
- David A Case (Wed Feb 24 2021 - 04:24:52 PST)
- Pranjal Bhuyan (Tue Feb 23 2021 - 21:45:21 PST)
- David A Case (Tue Feb 23 2021 - 04:41:57 PST)
- Pranjal Bhuyan (Tue Feb 23 2021 - 02:36:56 PST)
[AMBER] Probmlems compiling under macOS
- Gustaf Olsson (Wed Feb 10 2021 - 02:32:47 PST)
- Gustaf Olsson (Tue Feb 09 2021 - 07:42:17 PST)
- David A Case (Tue Feb 09 2021 - 05:30:57 PST)
- Gustaf Olsson (Tue Feb 09 2021 - 00:17:36 PST)
- Gustaf Olsson (Mon Feb 08 2021 - 23:50:07 PST)
- David A Case (Mon Feb 08 2021 - 06:58:30 PST)
- Gustaf Olsson (Mon Feb 08 2021 - 02:26:48 PST)
[AMBER] QM/MM in Amber
- David A Case (Tue Feb 02 2021 - 05:30:39 PST)
- Женя Елизарова (Tue Feb 02 2021 - 01:31:05 PST)
- Женя Елизарова (Tue Feb 02 2021 - 01:25:23 PST)
[AMBER] query regarding heme forcefield parameters
- David A Case (Fri Feb 19 2021 - 07:38:35 PST)
- Patil Pranita Uttamrao (Fri Feb 19 2021 - 02:07:27 PST)
[AMBER] Questions about loading FF02 and MMGBSA
- David A Case (Thu Feb 11 2021 - 04:42:14 PST)
- Matthew Guberman-Pfeffer (Wed Feb 10 2021 - 18:40:46 PST)
[AMBER] RAMD question (Xiaodong Wu)
- Charles Lin (Fri Feb 05 2021 - 10:59:28 PST)
- Charles Lin (Fri Feb 05 2021 - 10:53:31 PST)
- Carlos Simmerling (Fri Feb 05 2021 - 03:39:34 PST)
- 吴晓东 (Fri Feb 05 2021 - 01:19:57 PST)
[AMBER] RAMD simulation (Xiaodong)
- 吴晓东 (Sat Feb 06 2021 - 23:00:28 PST)
[AMBER] Random seed for restart files that have velocities?
- David A Case (Wed Feb 03 2021 - 05:44:00 PST)
- Liao (Tue Feb 02 2021 - 19:58:02 PST)
- Carlos Simmerling (Tue Feb 02 2021 - 18:42:50 PST)
- Liao (Tue Feb 02 2021 - 18:15:57 PST)
[AMBER] Regarding restarting of Gaussian Accelerated MD.
- Sruthi Sudhakar (Mon Feb 22 2021 - 20:39:04 PST)
[AMBER] single strand RNA parameters
- Jorge Iulek (Sat Feb 13 2021 - 01:59:39 PST)
- Jorge Iulek (Sat Feb 13 2021 - 02:03:10 PST)
- Daniel Roe (Thu Feb 11 2021 - 12:38:25 PST)
- Jiri Sponer (Thu Feb 11 2021 - 10:59:27 PST)
- Daniel Roe (Thu Feb 11 2021 - 10:08:41 PST)
- Jorge Iulek (Thu Feb 11 2021 - 08:41:54 PST)
- Jiri Sponer (Thu Feb 11 2021 - 07:39:45 PST)
- Daniel Roe (Thu Feb 11 2021 - 06:28:49 PST)
- Jorge Iulek (Wed Feb 10 2021 - 09:41:56 PST)
[AMBER] Solution to the replica exchange SGLD restart bug
- Charo del Genio (Mon Feb 01 2021 - 13:40:41 PST)
[AMBER] Stacking energy calculation
- Athena N (Sat Feb 20 2021 - 00:52:04 PST)
[AMBER] Steered MD
- Pinky Mazumder (Sat Feb 27 2021 - 06:37:50 PST)
- Pinky Mazumder (Sat Feb 27 2021 - 06:29:17 PST)
- Adrian Roitberg (Fri Feb 26 2021 - 08:14:12 PST)
- Pinky Mazumder (Fri Feb 26 2021 - 07:43:20 PST)
- Pinky Mazumder (Thu Feb 25 2021 - 16:13:19 PST)
- Carlos Simmerling (Thu Feb 25 2021 - 12:26:58 PST)
- Adrian Roitberg (Thu Feb 25 2021 - 12:22:18 PST)
- Pinky Mazumder (Thu Feb 25 2021 - 12:14:30 PST)
[AMBER] Sufficiently equilibrated or not
- Pengfei Li (Fri Feb 26 2021 - 15:31:15 PST)
- Carlos Simmerling (Mon Feb 22 2021 - 10:00:49 PST)
- Delwakkada Liyanage, Senal Dinuka (Mon Feb 22 2021 - 09:27:01 PST)
- Gordon Richard Chalmers (Sun Feb 21 2021 - 09:00:45 PST)
- Carlos Simmerling (Sun Feb 21 2021 - 08:29:37 PST)
- Brian Radak (Sun Feb 21 2021 - 08:29:07 PST)
- Gordon Richard Chalmers (Sun Feb 21 2021 - 08:12:59 PST)
- Carlos Simmerling (Sun Feb 21 2021 - 05:58:27 PST)
- Lachele Foley (Sat Feb 20 2021 - 23:04:17 PST)
- Gordon Richard Chalmers (Sat Feb 20 2021 - 22:24:29 PST)
- Delwakkada Liyanage, Senal Dinuka (Sat Feb 20 2021 - 18:33:52 PST)
- Lachele Foley (Sat Feb 20 2021 - 13:30:56 PST)
- Carlos Simmerling (Sat Feb 20 2021 - 12:35:24 PST)
- Delwakkada Liyanage, Senal Dinuka (Sat Feb 20 2021 - 11:58:31 PST)
- Lachele Foley (Sat Feb 20 2021 - 11:55:15 PST)
- Delwakkada Liyanage, Senal Dinuka (Sat Feb 20 2021 - 11:46:01 PST)
- Lachele Foley (Sat Feb 20 2021 - 11:41:24 PST)
- Delwakkada Liyanage, Senal Dinuka (Sat Feb 20 2021 - 11:17:14 PST)
[AMBER] suggestion of a patch for building MPI version of MMPBSA.py
- David A Case (Sat Feb 06 2021 - 05:49:42 PST)
- Yoshitaka Moriwaki (Sat Feb 06 2021 - 02:18:28 PST)
- David A Case (Fri Feb 05 2021 - 11:53:12 PST)
- Yoshitaka Moriwaki (Fri Feb 05 2021 - 09:43:17 PST)
[AMBER] Testing pmemd.cuda.MPI - how many failed file comparisons are innocuous?
- Nikolay N. Kuzmich (Fri Feb 12 2021 - 08:57:35 PST)
- David A Case (Fri Feb 12 2021 - 04:07:53 PST)
- Nikolay N. Kuzmich (Fri Feb 12 2021 - 01:44:56 PST)
[AMBER] theoretical doubt about TI
- Gabriel Jara (Wed Feb 17 2021 - 05:54:14 PST)
[AMBER] Thermodynamic integration for protein-protein interactions
- neildancer.sina.com (Mon Feb 22 2021 - 05:32:14 PST)
- David A Case (Mon Feb 22 2021 - 04:54:33 PST)
- neildancer.sina.com (Fri Feb 19 2021 - 08:02:29 PST)
- David A Case (Fri Feb 19 2021 - 07:33:25 PST)
- Carlos Simmerling (Fri Feb 19 2021 - 07:30:49 PST)
- WW (Fri Feb 19 2021 - 06:35:25 PST)
[AMBER] TI with igb. = 6
- Holly Freedman (Mon Feb 08 2021 - 09:47:02 PST)
[AMBER] tip3p water model in amber14
- David A Case (Fri Feb 26 2021 - 14:13:38 PST)
- Swisher, Justin S (Fri Feb 26 2021 - 08:59:07 PST)
- David A Case (Thu Feb 25 2021 - 17:54:45 PST)
- Swisher, Justin S (Thu Feb 25 2021 - 16:29:06 PST)
- David A Case (Thu Feb 25 2021 - 12:04:35 PST)
- Swisher, Justin S (Thu Feb 25 2021 - 10:36:55 PST)
- Carlos Simmerling (Fri Feb 19 2021 - 09:33:45 PST)
- Swisher, Justin S (Fri Feb 19 2021 - 08:48:24 PST)
[AMBER] tLeap, Fatal: Atom does not have a type
- David A Case (Tue Feb 16 2021 - 05:13:40 PST)
- raissa.conceicao.bol.com.br (Tue Feb 16 2021 - 03:40:18 PST)
- Carlos Simmerling (Mon Feb 15 2021 - 13:23:31 PST)
- Alysia Mandato (Mon Feb 15 2021 - 13:17:10 PST)
- Maria Nagan (Fri Feb 12 2021 - 14:41:58 PST)
- Kenneth Huang (Fri Feb 12 2021 - 14:32:32 PST)
- Alysia Mandato (Fri Feb 12 2021 - 11:08:52 PST)
[AMBER] Using divalent ions in LEaP
- David A Case (Sat Feb 13 2021 - 06:10:55 PST)
- Kenneth Huang (Fri Feb 12 2021 - 14:23:30 PST)
- Maria Nagan (Fri Feb 12 2021 - 14:14:44 PST)
- Sam Walsworth (Researcher) (Fri Feb 12 2021 - 14:04:26 PST)
- Maria Nagan (Fri Feb 12 2021 - 13:45:32 PST)
- Sam Walsworth (Researcher) (Fri Feb 12 2021 - 13:30:36 PST)
[AMBER] Why do trajectories get corrupted?
- Daniel Roe (Tue Feb 23 2021 - 11:26:33 PST)
- Carlos Simmerling (Sun Feb 21 2021 - 08:31:42 PST)
- Victoria E Hill (Sun Feb 21 2021 - 06:12:56 PST)
- Carlos Simmerling (Sun Feb 21 2021 - 05:51:19 PST)
- Victoria E Hill (Sun Feb 21 2021 - 05:36:06 PST)
- Carlos Simmerling (Sun Feb 21 2021 - 05:17:40 PST)
- Victoria E Hill (Sun Feb 21 2021 - 04:58:10 PST)
- Maria Nagan (Sat Feb 20 2021 - 09:09:34 PST)
- Victoria E Hill (Sat Feb 20 2021 - 08:36:44 PST)
[AMBER] ZAFF force field
- Pengfei Li (Fri Feb 26 2021 - 15:12:51 PST)

Amber Archive Feb 2021 by subject