Re: [AMBER] Thermodynamic integration for protein-protein interactions

From: <neildancer.sina.com>
Date: Mon, 22 Feb 2021 21:32:14 +0800

   Thank you for your replies. I felt so shame because of my reckless
   question. I will read that tutorial carefully.

   Best

   Ning
   On 02/22/2021 20:54, [1]David A Case wrote:

     On Sat, Feb 20, 2021, neildancer.sina.com wrote:
>
> how about using MMPBSA method to evaluate the effect of mutation on
     protein
> binding?
     Have you looked at Tutorial 7.1? It's opening sentence is this: "In this
     tutorial we will use the MM-PBSA method to calculate the binding free
     energy
     for the association of two proteins." There is some analysis of mutations
     here as well.
     ....dac
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References

   1. mailto:david.case.rutgers.edu
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Received on Mon Feb 22 2021 - 06:00:05 PST
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