Amber Archive Feb 2021: by date

Sunday, 31 January 2021
- Re: [AMBER] Non zero ligand warning Ayesha Fatima
- Re: [AMBER] Non zero ligand warning Ayesha Fatima
- [AMBER] how does tleap choose missing side chain conformations Vaibhav Dixit
Monday, 1 February 2021
- Re: [AMBER] how does tleap choose missing side chain conformations Carlos Simmerling
- [AMBER] configure_mpich error Nikolay N. Kuzmich
- [AMBER] erro free energy calculation Renato Araujo
- Re: [AMBER] configure_mpich error David A Case
- Re: [AMBER] erro free energy calculation David A Case
- [AMBER] Solution to the replica exchange SGLD restart bug Charo del Genio
- Re: [AMBER] max pairlist cutoff must be less than unit cell max sphere radius! Pinky Mazumder
- Re: [AMBER] max pairlist cutoff must be less than unit cell max sphere radius! Carlos Simmerling
Tuesday, 2 February 2021
- [AMBER] QM/MM in Amber Женя Елизарова
- Re: [AMBER] QM/MM in Amber Женя Елизарова
- Re: [AMBER] how does tleap choose missing side chain conformations Vaibhav Dixit
- Re: [AMBER] QM/MM in Amber David A Case
- Re: [AMBER] configure_mpich error Nikolay N. Kuzmich
- [AMBER] Hydrogen bond analysis tutorial Renato Araujo
- Re: [AMBER] Hydrogen bond analysis tutorial Maria Nagan
- [AMBER] error while building Amber20 with Intel + CUDA Susan Chacko
- Re: [AMBER] error while building Amber20 with Intel + CUDA David A Case
- Re: [AMBER] error while building Amber20 with Intel + CUDA Susan Chacko
- Re: [AMBER] Found bug in sander in restarting SGLD replica exchange runs Carlos Simmerling
- [AMBER] Random seed for restart files that have velocities? Liao
- Re: [AMBER] Random seed for restart files that have velocities? Carlos Simmerling
- Re: [AMBER] Random seed for restart files that have velocities? Liao
Wednesday, 3 February 2021
- [AMBER] ModuleNotFoundError: No module named 'MMPBSA_mods' Ch Bilal
- [AMBER] Nudged Elastic Band solvent choice and initial heating problem 李明玉
- Re: [AMBER] Nudged Elastic Band solvent choice and initial heating problem Carlos Simmerling
- Re: [AMBER] Random seed for restart files that have velocities? David A Case
- Re: [AMBER] ModuleNotFoundError: No module named 'MMPBSA_mods' David A Case
- Re: [AMBER] Nudged Elastic Band solvent choice and initial heating problem David A Case
- [AMBER] AMBER HREMD replica trajectory Richard Kullmann
- Re: [AMBER] AMBER HREMD replica trajectory Daniel Roe
- Re: [AMBER] Nudged Elastic Band solvent choice and initial heating problem 李明玉
- Re: [AMBER] Nudged Elastic Band solvent choice and initial heating problem Carlos Simmerling
- [AMBER] GPU power usage drop for igb = 8 compared to igb = 2 Demian Riccardi
- Re: [AMBER] GPU power usage drop for igb = 8 compared to igb = 2 Carlos Simmerling
Thursday, 4 February 2021
- [AMBER] Prepare pbd file modified cyclodextrin Игорь Злотников
- [AMBER] CUDE upgrade question and AMBER Seibold, Steve Allan
- [AMBER] MMPBSA.py Error: Could not import Amber Python modules Vitor Rabelo
- Re: [AMBER] Bug in the Mol2 format: space converted into a new oxygen atom liu junjun
- [AMBER] decompose running error Nisha Amarnath Jonniya
Friday, 5 February 2021
- [AMBER] RAMD question (Xiaodong Wu) 吴晓东
- [AMBER] Prmtop missing resid and resname info Violeta Burns Casamayor
- Re: [AMBER] Prmtop missing resid and resname info Carlos Simmerling
- Re: [AMBER] RAMD question (Xiaodong Wu) Carlos Simmerling
- Re: [AMBER] decompose running error David A Case
- Re: [AMBER] Fwd: unreadable *.mdcrd David A Case
- Re: [AMBER] Prmtop missing resid and resname info Kenneth Huang
- [AMBER] curiosity about sander reading a traj being written by GPU code Vaibhav Dixit
- [AMBER] External electric fields cannot be used when npt > 0 李明玉
- [AMBER] suggestion of a patch for building MPI version of MMPBSA.py Yoshitaka Moriwaki
- Re: [AMBER] RAMD question (Xiaodong Wu) Charles Lin
- Re: [AMBER] RAMD question (Xiaodong Wu) Charles Lin
- Re: [AMBER] suggestion of a patch for building MPI version of MMPBSA.py David A Case
- [AMBER] problem deriving implicit polarised charges charges with mdgx Luis Simon
- Re: [AMBER] Fwd: unreadable *.mdcrd Tomasz Miernik
- Re: [AMBER] Fwd: unreadable *.mdcrd Elvis A F Martis
Saturday, 6 February 2021
- [AMBER] About changes in frcmod.parmbsc0 Alan
- Re: [AMBER] About changes in frcmod.parmbsc0 Thomas Cheatham
- Re: [AMBER] suggestion of a patch for building MPI version of MMPBSA.py Yoshitaka Moriwaki
- Re: [AMBER] curiosity about sander reading a traj being written by GPU code Vaibhav Dixit
- Re: [AMBER] About changes in frcmod.parmbsc0 David A Case
- Re: [AMBER] suggestion of a patch for building MPI version of MMPBSA.py David A Case
- [AMBER] RAMD simulation (Xiaodong) 吴晓东
Sunday, 7 February 2021
- [AMBER] Fix the dihedral angle during the simulation Rinsha Chk
- [AMBER] polarizable FF in amber18 or 20 Vaibhav Dixit
- Re: [AMBER] Fix the dihedral angle during the simulation David A Case
- Re: [AMBER] Fix the dihedral angle during the simulation Rinsha Chk
- [AMBER] CPPTRAJ cannot open RXSGLD trajectories out of the box Charo del Genio
- Re: [AMBER] CPPTRAJ cannot open RXSGLD trajectories out of the box Daniel Roe
- Re: [AMBER] polarizable FF in amber18 or 20 David A Case
- [AMBER] multi source calls in tleap Alan
- Re: [AMBER] problem deriving implicit polarised charges charges with mdgx Luis Simon
Monday, 8 February 2021
- [AMBER] mdgx ipolQ charges of a charged residue Luis Simon
- Re: [AMBER] Probmlems compiling under macOS Gustaf Olsson
- Re: [AMBER] Bug in the Mol2 format: space converted into a new oxygen atom Junmei Wang
- Re: [AMBER] multi source calls in tleap David A Case
- Re: [AMBER] Probmlems compiling under macOS David A Case
- [AMBER] TI with igb. = 6 Holly Freedman
- Re: [AMBER] CPPTRAJ - KMeans Value for K Piotr Fajer
- Re: [AMBER] curiosity about sander reading a traj being written by GPU code Vaibhav Dixit
- Re: [AMBER] decompose running error Nisha Amarnath Jonniya
- Re: [AMBER] decompose running error Nisha Amarnath Jonniya
- Re: [AMBER] Probmlems compiling under macOS Gustaf Olsson
Tuesday, 9 February 2021
- Re: [AMBER] Probmlems compiling under macOS Gustaf Olsson
- Re: [AMBER] curiosity about sander reading a traj being written by GPU code Carlos Simmerling
- Re: [AMBER] curiosity about sander reading a traj being written by GPU code Vaibhav Dixit
- Re: [AMBER] Probmlems compiling under macOS David A Case
- Re: [AMBER] CPPTRAJ - KMeans Value for K Christina Bergonzo
- [AMBER] IEEE_OVERFLOW_FLAG Mudrovcic, Korana
- Re: [AMBER] curiosity about sander reading a traj being written by GPU code Adrian Roitberg
- Re: [AMBER] Probmlems compiling under macOS Gustaf Olsson
- Re: [AMBER] curiosity about sander reading a traj being written by GPU code Kenneth Huang
- [AMBER] Preparation of i-Motif structures Sruthi Sudhakar
Wednesday, 10 February 2021
- Re: [AMBER] Probmlems compiling under macOS Gustaf Olsson
- Re: [AMBER] curiosity about sander reading a traj being written by GPU code Vaibhav Dixit
- Re: [AMBER] curiosity about sander reading a traj being written by GPU code Vaibhav Dixit
- Re: [AMBER] Preparation of i-Motif structures Petr Stadlbauer
- [AMBER] single strand RNA parameters Jorge Iulek
- [AMBER] maximum no of atoms for simulation Pinky Mazumder
- Re: [AMBER] maximum no of atoms for simulation Adrian Roitberg
- Re: [AMBER] maximum no of atoms for simulation Pinky Mazumder
- [AMBER] Questions about loading FF02 and MMGBSA Matthew Guberman-Pfeffer
Thursday, 11 February 2021
- [AMBER] Parameters for Iron Oxide Matthew Guberman-Pfeffer
- [AMBER] High value for force constant is acceptable? Rinsha Chk
- Re: [AMBER] Questions about loading FF02 and MMGBSA David A Case
- Re: [AMBER] multi source calls in tleap Matias Machado
- Re: [AMBER] single strand RNA parameters Daniel Roe
- Re: [AMBER] single strand RNA parameters Jiri Sponer
- Re: [AMBER] single strand RNA parameters Jorge Iulek
- Re: [AMBER] single strand RNA parameters Daniel Roe
- Re: [AMBER] single strand RNA parameters Jiri Sponer
- Re: [AMBER] single strand RNA parameters Daniel Roe
- [AMBER] leap hangs on dihedral in frcmod? Kenneth Huang
Friday, 12 February 2021
- [AMBER] Testing pmemd.cuda.MPI - how many failed file comparisons are innocuous? Nikolay N. Kuzmich
- [AMBER] Amber20 GPU plus PLUMED Domenico Marson
- Re: [AMBER] Testing pmemd.cuda.MPI - how many failed file comparisons are innocuous? David A Case
- Re: [AMBER] leap hangs on dihedral in frcmod? Matias Machado
- [AMBER] Fwd: MMPBSA Error Sadaf Rani
- Re: [AMBER] Testing pmemd.cuda.MPI - how many failed file comparisons are innocuous? Nikolay N. Kuzmich
- [AMBER] tLeap, Fatal: Atom does not have a type Alysia Mandato
- [AMBER] Using divalent ions in LEaP Sam Walsworth (Researcher)
- Re: [AMBER] Using divalent ions in LEaP Maria Nagan
- Re: [AMBER] Using divalent ions in LEaP Sam Walsworth (Researcher)
- Re: [AMBER] leap hangs on dihedral in frcmod? Kenneth Huang
- Re: [AMBER] Using divalent ions in LEaP Maria Nagan
- Re: [AMBER] Using divalent ions in LEaP Kenneth Huang
- Re: [AMBER] tLeap, Fatal: Atom does not have a type Kenneth Huang
- Re: [AMBER] tLeap, Fatal: Atom does not have a type Maria Nagan
- Re: [AMBER] Parameters for Iron Oxide Maria Nagan
Saturday, 13 February 2021
- Re: [AMBER] single strand RNA parameters Jorge Iulek
- Re: [AMBER] single strand RNA parameters Jorge Iulek
- Re: [AMBER] Using divalent ions in LEaP David A Case
- [AMBER] Error while setting up constant pH MD simulations Yashraj Kulkarni
- Re: [AMBER] OPC monovalent ion parameters Cavender, Chapin
- [AMBER] Disparities between dG solv from GB and PB Models mish
- Re: [AMBER] Disparities between dG solv from GB and PB Models Ray Luo
- Re: [AMBER] Disparities between dG solv from GB and PB Models mish
- Re: [AMBER] OPC monovalent ion parameters Pengfei Li
- Re: [AMBER] OPC monovalent ion parameters Thomas Cheatham
Sunday, 14 February 2021
- [AMBER] Fwd: Prepare pbd file modified cyclodextrin Игорь Злотников
- Re: [AMBER] multi source calls in tleap Alan
Monday, 15 February 2021
- Re: [AMBER] OPC monovalent ion parameters Pengfei Li
- Re: [AMBER] tLeap, Fatal: Atom does not have a type Alysia Mandato
- Re: [AMBER] tLeap, Fatal: Atom does not have a type Carlos Simmerling
Tuesday, 16 February 2021
- [AMBER] Altering ligand positions in Xleap Sruthi Sudhakar
- Re: [AMBER] tLeap, Fatal: Atom does not have a type raissa.conceicao.bol.com.br
- Re: [AMBER] tLeap, Fatal: Atom does not have a type David A Case
- Re: [AMBER] Altering ligand positions in Xleap David A Case
- Re: [AMBER] Altering ligand positions in Xleap Gordon Richard Chalmers
- [AMBER] Membrane protein-ligand simulation - application of multiple FF - compatibility and reliability Prasanth G, Research Scholar
Wednesday, 17 February 2021
- [AMBER] error with AMBER installation Mohammad Alaraby
- [AMBER] theoretical doubt about TI Gabriel Jara
- Re: [AMBER] error with AMBER installation David A Case
Thursday, 18 February 2021
- Re: [AMBER] Help with installation David A Case
- Re: [AMBER] Amber20 GPU plus PLUMED David A Case
- Re: [AMBER] High value for force constant is acceptable? David A Case
- Re: [AMBER] High value for force constant is acceptable? Carlos Simmerling
- [AMBER] Making sense of tip3p.frcmod Paul, Austin
- Re: [AMBER] Making sense of tip3p.frcmod David A Case
- Re: [AMBER] High value for force constant is acceptable? Rinsha Chk
Friday, 19 February 2021
- [AMBER] GaMD output (gamd.log) file analysis jacob wick
- [AMBER] query regarding heme forcefield parameters Patil Pranita Uttamrao
- [AMBER] Thermodynamic integration for protein-protein interactions WW
- Re: [AMBER] Thermodynamic integration for protein-protein interactions Carlos Simmerling
- Re: [AMBER] Thermodynamic integration for protein-protein interactions David A Case
- Re: [AMBER] query regarding heme forcefield parameters David A Case
- Re: [AMBER] Thermodynamic integration for protein-protein interactions neildancer.sina.com
- [AMBER] tip3p water model in amber14 Swisher, Justin S
- Re: [AMBER] tip3p water model in amber14 Carlos Simmerling
- [AMBER] Interaction energy by MM-PBSA for a superantigen with important Zn(II) center SATYAJIT KHATUA
- Re: [AMBER] High value for force constant is acceptable? Karl Kirschner
- [AMBER] MAXPR error in sander sp job Vaibhav Dixit
Saturday, 20 February 2021
- [AMBER] Stacking energy calculation Athena N
- Re: [AMBER] MAXPR error in sander sp job Vaibhav Dixit
- Re: [AMBER] MAXPR error in sander sp job David A Case
- Re: [AMBER] Interaction energy by MM-PBSA for a superantigen with important Zn(II) center David A Case
- Re: [AMBER] MAXPR error in sander sp job Vaibhav Dixit
- [AMBER] Why do trajectories get corrupted? Victoria E Hill
- Re: [AMBER] Why do trajectories get corrupted? Maria Nagan
- [AMBER] Sufficiently equilibrated or not Delwakkada Liyanage, Senal Dinuka
- Re: [AMBER] Sufficiently equilibrated or not Lachele Foley
- Re: [AMBER] Sufficiently equilibrated or not Delwakkada Liyanage, Senal Dinuka
- Re: [AMBER] Sufficiently equilibrated or not Lachele Foley
- Re: [AMBER] Sufficiently equilibrated or not Delwakkada Liyanage, Senal Dinuka
- Re: [AMBER] Sufficiently equilibrated or not Carlos Simmerling
- Re: [AMBER] Sufficiently equilibrated or not Lachele Foley
- Re: [AMBER] MAXPR error in sander sp job David A Case
- Re: [AMBER] MAXPR error in sander sp job Vaibhav Dixit
- Re: [AMBER] MAXPR error in sander sp job Carlos Simmerling
- Re: [AMBER] MAXPR error in sander sp job Vaibhav Dixit
- Re: [AMBER] Sufficiently equilibrated or not Delwakkada Liyanage, Senal Dinuka
- Re: [AMBER] Sufficiently equilibrated or not Gordon Richard Chalmers
- Re: [AMBER] MAXPR error in sander sp job Vaibhav Dixit
- Re: [AMBER] Sufficiently equilibrated or not Lachele Foley
Sunday, 21 February 2021
- [AMBER] Fwd: GaMD output (gamd.log) file analysis jacob wick
- Re: [AMBER] MAXPR error in sander sp job Carlos Simmerling
- Re: [AMBER] Why do trajectories get corrupted? Victoria E Hill
- [AMBER] case studies of MD based drug discovery Vaibhav Dixit
- Re: [AMBER] Why do trajectories get corrupted? Carlos Simmerling
- Re: [AMBER] Why do trajectories get corrupted? Victoria E Hill
- Re: [AMBER] Why do trajectories get corrupted? Carlos Simmerling
- Re: [AMBER] Sufficiently equilibrated or not Carlos Simmerling
- Re: [AMBER] Why do trajectories get corrupted? Victoria E Hill
- Re: [AMBER] Sufficiently equilibrated or not Gordon Richard Chalmers
- Re: [AMBER] Sufficiently equilibrated or not Brian Radak
- Re: [AMBER] Sufficiently equilibrated or not Carlos Simmerling
- Re: [AMBER] Why do trajectories get corrupted? Carlos Simmerling
- Re: [AMBER] Sufficiently equilibrated or not Gordon Richard Chalmers
Monday, 22 February 2021
- Re: [AMBER] MAXPR error in sander sp job Vaibhav Dixit
- Re: [AMBER] MAXPR error in sander sp job Carlos Simmerling
- Re: [AMBER] MAXPR error in sander sp job Vaibhav Dixit
- Re: [AMBER] MAXPR error in sander sp job David A Case
- Re: [AMBER] Thermodynamic integration for protein-protein interactions David A Case
- Re: [AMBER] IEEE_OVERFLOW_FLAG David A Case
- Re: [AMBER] Bug in the Mol2 format: space converted into a new oxygen atom David A Case
- Re: [AMBER] Thermodynamic integration for protein-protein interactions neildancer.sina.com
- Re: [AMBER] IEEE_OVERFLOW_FLAG Åke Sandgren
- [AMBER] Odd number of electrons divyabharathi korlepara
- [AMBER] Acpype error: Timed out process killed Shilpa Gupta
- Re: [AMBER] MAXPR error in sander sp job Vaibhav Dixit
- Re: [AMBER] Sufficiently equilibrated or not Delwakkada Liyanage, Senal Dinuka
- Re: [AMBER] Sufficiently equilibrated or not Carlos Simmerling
- Re: [AMBER] MAXPR error in sander sp job David A Case
- Re: [AMBER] Odd number of electrons David A Case
- Re: [AMBER] Acpype error: Timed out process killed David A Case
- Re: [AMBER] multi source calls in tleap Matias Machado
- Re: [AMBER] OPC monovalent ion parameters Matias Machado
- Re: [AMBER] Acpype error: Timed out process killed Alan
- Re: [AMBER] Membrane protein-ligand simulation - application of multiple FF - compatibility and reliability Matias Machado
- [AMBER] Regarding restarting of Gaussian Accelerated MD. Sruthi Sudhakar
- Re: [AMBER] MAXPR error in sander sp job Vaibhav Dixit
Tuesday, 23 February 2021
- [AMBER] Problem with pmemd.MPI Pranjal Bhuyan
- Re: [AMBER] Problem with pmemd.MPI David A Case
- [AMBER] Multiple Harmonic Restraints Li,Haoxi
- Re: [AMBER] Multiple Harmonic Restraints Thomas Gaillard
- Re: [AMBER] Why do trajectories get corrupted? Daniel Roe
- Re: [AMBER] Odd number of electrons divyabharathi korlepara
- Re: [AMBER] Interaction energy by MM-PBSA for a superantigen with important Zn(II) center SATYAJIT KHATUA
- [AMBER] How to recompile AmberTools Matthew Guberman-Pfeffer
- Re: [AMBER] Problem with pmemd.MPI Pranjal Bhuyan
Wednesday, 24 February 2021
- Re: [AMBER] Odd number of electrons Gustaf Olsson
- Re: [AMBER] How to recompile AmberTools Gustaf Olsson
- [AMBER] MDGX charge fitting with some charges fixed or restrained Luis Simon
- [AMBER] CPPTRAJ mindist comand Richard Kullmann
- Re: [AMBER] CPPTRAJ mindist comand Daniel Roe
- Re: [AMBER] Problem with pmemd.MPI David A Case
- Re: [AMBER] [lsimon.usal.es: MDGX charge fitting with some charges fixed or restrained] David Cerutti
- Re: [AMBER] [lsimon.usal.es: MDGX charge fitting with some charges fixed or restrained] Luis Simon
- Re: [AMBER] How to recompile AmberTools Matthew Guberman-Pfeffer
- Re: [AMBER] How to recompile AmberTools David A Case
- [AMBER] Apply Lennar-Jones potential between small molecules Ming Tang
Thursday, 25 February 2021
- Re: [AMBER] How to recompile AmberTools Gustaf Olsson
- Re: [AMBER] Calculating forces Daniel Roe
- [AMBER] AmberTools20 parallel test errors Alain Arsene
- Re: [AMBER] AmberTools20 parallel test errors David A Case
- [AMBER] GPU TI PROBLEM Umut Çağan Uçar
- [AMBER] Amber18 + Ambertools20 Rafał Bachorz
- Re: [AMBER] GPU TI PROBLEM accuratefreeenergy.gmail.com
- [AMBER] MMPBSA, signal SIGSEGV failure Matthew Guberman-Pfeffer
- Re: [AMBER] Amber18 + Ambertools20 David A Case
- Re: [AMBER] Apply Lennar-Jones potential between small molecules Carlos Simmerling
- Re: [AMBER] MMPBSA, signal SIGSEGV failure Ray Luo
- Re: [AMBER] Apply Lennar-Jones potential between small molecules Carlos Simmerling
- [AMBER] help with cpptraj error (segmentation fault) Cato, Lee
- Re: [AMBER] help with cpptraj error (segmentation fault) Daniel Roe
- Re: [AMBER] tip3p water model in amber14 Swisher, Justin S
- [AMBER] Molecule volume in cpptraj? Gustavo Seabra
- Re: [AMBER] tip3p water model in amber14 David A Case
- [AMBER] Steered MD Pinky Mazumder
- Re: [AMBER] Steered MD Adrian Roitberg
- Re: [AMBER] Steered MD Carlos Simmerling
- Re: [AMBER] Apply Lennar-Jones potential between small molecules Ming Tang
- Re: [AMBER] Apply Lennar-Jones potential between small molecules Carlos Simmerling
- Re: [AMBER] Apply Lennar-Jones potential between small molecules Ming Tang
- [AMBER] dimer shifts under NPT ensemble Qinghua Liao
- Re: [AMBER] Steered MD Pinky Mazumder
- Re: [AMBER] tip3p water model in amber14 Swisher, Justin S
- Re: [AMBER] tip3p water model in amber14 David A Case
- Re: [AMBER] dimer shifts under NPT ensemble David A Case
- Re: [AMBER] dimer shifts under NPT ensemble Thomas Cheatham
- Re: [AMBER] dimer shifts under NPT ensemble Qinghua Liao
Friday, 26 February 2021
- Re: [AMBER] GPU TI PROBLEM Umut Çağan Uçar
Thursday, 25 February 2021
- Re: [AMBER] dimer shifts under NPT ensemble Qinghua Liao
Friday, 26 February 2021
- Re: [AMBER] dimer shifts under NPT ensemble Thomas Gaillard
- Re: [AMBER] Error while setting up constant pH MD simulations Jason Swails
- Re: [AMBER] Molecule volume in cpptraj? Daniel Roe
- Re: [AMBER] Calculating forces Click, Timothy Howard
- Re: [AMBER] Steered MD Pinky Mazumder
- Re: [AMBER] Steered MD Adrian Roitberg
- Re: [AMBER] tip3p water model in amber14 Swisher, Justin S
- Re: [AMBER] GPU TI PROBLEM accuratefreeenergy.gmail.com
- [AMBER] Calculating pairwise RMSD of two proteins Sadaf Rani
- Re: [AMBER] Calculating pairwise RMSD of two proteins Daniel Roe
- Re: [AMBER] Molecule volume in cpptraj? Gustavo Seabra
- [AMBER] cpptraj CMAP flag issue with charmm-gui parm7 files Wesley Michael Botello-Smith
- Re: [AMBER] tip3p water model in amber14 David A Case
- Re: [AMBER] dimer shifts under NPT ensemble Qinghua Liao
- Re: [AMBER] OPC monovalent ion parameters Pengfei Li
- Re: [AMBER] ZAFF force field Pengfei Li
- Re: [AMBER] dimer shifts under NPT ensemble Qinghua Liao
- Re: [AMBER] Sufficiently equilibrated or not Pengfei Li
- Re: [AMBER] cpptraj CMAP flag issue with charmm-gui parm7 files Daniel Roe
Saturday, 27 February 2021
- [AMBER] atom number difference in topology and simulated trajectory Ayesha Fatima
- Re: [AMBER] atom number difference in topology and simulated trajectory Elvis A F Martis
- Re: [AMBER] atom number difference in topology and simulated trajectory Ayesha Fatima
- Re: [AMBER] atom number difference in topology and simulated trajectory Elvis A F Martis
- Re: [AMBER] Steered MD Pinky Mazumder
- Re: [AMBER] Steered MD Pinky Mazumder
- Re: [AMBER] atom number difference in topology and simulated trajectory Ayesha Fatima
- Re: [AMBER] atom number difference in topology and simulated trajectory Elvis A F Martis
Sunday, 28 February 2021
- Re: [AMBER] atom number difference in topology and simulated trajectory Ayesha Fatima
- Re: [AMBER] atom number difference in topology and simulated trajectory Elvis A F Martis

Last message date: Sun Feb 28 2021 - 03:30:02 PST
Archived on: Fri Apr 19 2024 - 05:55:50 PDT

Amber Archive Feb 2021 by date