Good afternoon, Dear colleagues!
I have some questions about preparing pdb files for Amber. I need to get
cyclodextrin.pdb in amber format, so i named residues in ring 4GA. Then i
modified CD with mannose --> residue became UGA, and mannose named 0MA. But
now i want make CD-mannose using spacer  between CD and mannose
(etilenglicol or acetamide). Problem: how named this atoms (spacer) or how i
may convert pdb structure from pymol (or othet not Amber format) to amber
format?
Thank you!
Best wishes,
Zlotnikov Igor
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Received on Thu Feb 04 2021 - 01:00:02 PST
