[AMBER] Calculating pairwise RMSD of two proteins

From: Sadaf Rani <sadafrani6.gmail.com>
Date: Fri, 26 Feb 2021 23:31:20 +0500

Dear Amber user
Could you please guide me if it is possible to calculate pairwise RMSD of
two different proteins?
I have gone through the following tutorial:-
https://ambermd.org/tutorials/analysis/tutorial_notebooks/pytraj_notebook/index.html
However, it is about comparing an NMR structure from the trajectory.
Please give your suggestions. Is it right to compare two different proteins
pairwise RMSD?

Regards.
Sadaf
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Received on Fri Feb 26 2021 - 11:00:02 PST
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