Amber Archive Dec 2019: by author

Joanna Michelle E. Chua
- Re: [AMBER] Chemical education for MD articles (Tue Dec 03 2019 - 05:18:00 PST)
- Re: [AMBER] Chemical education for MD articles (Mon Dec 02 2019 - 18:25:19 PST)
Aashish Bhatt
- Re: [AMBER] Charge distribution in molecule (Thu Dec 05 2019 - 04:09:00 PST)
- [AMBER] Charge distribution in molecule (Sun Dec 01 2019 - 23:04:21 PST)
Albert
- Re: [AMBER] Fwd: problem of compiling (Thu Dec 12 2019 - 23:16:59 PST)
- [AMBER] intel compiling failed (Thu Dec 12 2019 - 19:47:28 PST)
- Re: [AMBER] Fwd: problem of compiling (Thu Dec 12 2019 - 16:44:36 PST)
- [AMBER] Fwd: problem of compiling (Wed Dec 11 2019 - 16:21:54 PST)
- [AMBER] problem of compiling (Sat Dec 07 2019 - 20:23:04 PST)
ankita mehta
- Re: [AMBER] sequence command (Mon Dec 02 2019 - 02:15:44 PST)
- [AMBER] sequence command (Sun Dec 01 2019 - 22:28:03 PST)
ARITRA MITRA
- [AMBER] Error during installation (Tue Dec 24 2019 - 01:23:12 PST)
Ayesha Fatima
- Re: [AMBER] some queries (Mon Dec 30 2019 - 06:24:29 PST)
- [AMBER] some queries (Sun Dec 29 2019 - 08:41:39 PST)
Baker, Joseph
- [AMBER] fxyz and outxyz (Thu Dec 05 2019 - 19:09:11 PST)
Bellesis, Andrew G
- Re: [AMBER] cpptraj RMS calculations appear to be incorrect (Tue Dec 03 2019 - 08:00:41 PST)
- [AMBER] cpptraj RMS calculations appear to be incorrect (Mon Dec 02 2019 - 09:02:50 PST)
Bill Ross
- Re: [AMBER] nuc.nab:no such file found error (Mon Dec 16 2019 - 22:52:19 PST)
- Re: [AMBER] Problems installing mpi for AMBER 18. (Mon Dec 16 2019 - 07:45:51 PST)
- Re: [AMBER] Virtual box with imin = 1 or imin = 5 (Sun Dec 15 2019 - 21:59:49 PST)
- Re: [AMBER] Problems installing mpi for AMBER 18. (Sun Dec 15 2019 - 17:31:03 PST)
- Re: [AMBER] Error when running MD (Fri Dec 13 2019 - 11:02:13 PST)
- Re: [AMBER] error (Thu Dec 12 2019 - 11:26:17 PST)
- Re: [AMBER] Time shift. (Thu Dec 12 2019 - 00:17:03 PST)
- Re: [AMBER] error (Wed Dec 11 2019 - 14:54:52 PST)
- Re: [AMBER] PrmtopError: Complex natom != receptor natom + ligand natom (Sun Dec 08 2019 - 18:02:59 PST)
- Re: [AMBER] Warning: 2 or more molecules (3 and 4) share residue numbers (1003). (Thu Dec 05 2019 - 21:27:39 PST)
- Re: [AMBER] Charge distribution in molecule (Mon Dec 02 2019 - 05:42:54 PST)
Billiot, Eugene
- Re: [AMBER] help needed for failed installation of CUDA for GPU-accelerated versions of pmemd for AMBER 18 (Tue Dec 24 2019 - 10:19:16 PST)
- [AMBER] help needed for failed installation of CUDA for GPU-accelerated versions of pmemd for AMBER 18 (Sun Dec 22 2019 - 14:30:26 PST)
- Re: [AMBER] Amber18 download instructions (Fri Dec 20 2019 - 14:16:01 PST)
- Re: [AMBER] Amber18 download instructions (Fri Dec 20 2019 - 14:10:18 PST)
- [AMBER] Amber18 installation problem (Fri Dec 20 2019 - 13:22:02 PST)
- Re: [AMBER] Problems installing Amber 18 (Wed Dec 18 2019 - 06:46:38 PST)
- Re: [AMBER] installing Amber 18 issues (Tue Dec 17 2019 - 19:17:58 PST)
- [AMBER] installing Amber 18 issues (Tue Dec 17 2019 - 15:46:00 PST)
- Re: [AMBER] Problems installing Amber 18 (Tue Dec 17 2019 - 13:58:14 PST)
- [AMBER] Problems installing Amber 18 (Tue Dec 17 2019 - 13:54:07 PST)
- Re: [AMBER] Problems installing mpi for AMBER 18. I was trying to install mpi I was typing in (Mon Dec 16 2019 - 08:07:21 PST)
- Re: [AMBER] Problems installing mpi for AMBER 18. (Mon Dec 16 2019 - 07:42:07 PST)
- Re: [AMBER] Problems installing mpi for AMBER 18. (Sun Dec 15 2019 - 18:04:35 PST)
- [AMBER] Problems installing mpi for AMBER 18. (Sun Dec 15 2019 - 17:08:03 PST)
Brian Radak
- Re: [AMBER] Any way of making protein rigid in MD simulation? (Mon Dec 16 2019 - 07:13:30 PST)
Carlos Simmerling
- Re: [AMBER] Parameters to be used for protein in implicit solvent (Fri Dec 27 2019 - 05:35:41 PST)
- Re: [AMBER] Minimization equilibration of protein+ligand prior to TI setup (Wed Dec 25 2019 - 03:51:15 PST)
- Re: [AMBER] MMGB/PBSA parameters (Mon Dec 23 2019 - 10:33:36 PST)
- Re: [AMBER] ff19SB with end-caps pmemd.cuda problem (Tue Dec 17 2019 - 08:21:16 PST)
- Re: [AMBER] ff19SB with end-caps pmemd.cuda problem (Tue Dec 17 2019 - 06:04:13 PST)
- Re: [AMBER] Virtual box with imin = 1 or imin = 5 (Mon Dec 16 2019 - 05:16:32 PST)
- Re: [AMBER] Ti on pmemd.CUDA (Thu Dec 12 2019 - 09:36:18 PST)
- Re: [AMBER] error (Wed Dec 11 2019 - 11:28:32 PST)
- Re: [AMBER] ff19SB with end-caps pmemd.cuda problem (Wed Dec 11 2019 - 08:54:39 PST)
- Re: [AMBER] ff19SB with end-caps pmemd.cuda problem (Wed Dec 11 2019 - 07:10:18 PST)
- Re: [AMBER] ff19SB with end-caps pmemd.cuda problem (Wed Dec 11 2019 - 06:02:22 PST)
- Re: [AMBER] ff19SB with end-caps pmemd.cuda problem (Wed Dec 11 2019 - 03:53:44 PST)
- Re: [AMBER] cpptraj RMS calculations appear to be incorrect (Mon Dec 02 2019 - 10:18:09 PST)
Casalini Tommaso
- Re: [AMBER] imin=5 fails to produce output (Fri Dec 20 2019 - 01:29:12 PST)
Charo del Genio
- Re: [AMBER] problem of compiling (Sun Dec 08 2019 - 00:46:19 PST)
Cruzeiro,Vinicius Wilian D
- Re: [AMBER] Any idea on this error and how to troubleshoot (Mon Dec 16 2019 - 13:09:49 PST)
Daniel Roe
- Re: [AMBER] cpptraj.MPI versus cpptraj (Fri Dec 20 2019 - 05:23:54 PST)
- Re: [AMBER] cpptraj.MPI versus cpptraj (Fri Dec 20 2019 - 05:22:39 PST)
- Re: [AMBER] User-defined high precision AMBER trajectory file formats (Sun Dec 15 2019 - 12:14:13 PST)
- Re: [AMBER] error (Sun Dec 15 2019 - 12:10:09 PST)
- Re: [AMBER] error (Tue Dec 10 2019 - 09:01:45 PST)
- Re: [AMBER] Chemical education for MD articles (Tue Dec 03 2019 - 05:02:31 PST)
David A Case
- Re: [AMBER] intel compiling failed (Fri Dec 13 2019 - 04:30:52 PST)
- Re: [AMBER] GaMD problems with different computers. (Fri Dec 13 2019 - 04:22:32 PST)
- Re: [AMBER] Flexible protein! (Fri Dec 13 2019 - 04:17:10 PST)
- Re: [AMBER] Fwd: problem of compiling (Thu Dec 12 2019 - 06:05:15 PST)
- Re: [AMBER] Found an invalid periodicity in the prmtop file : MMPBSA (Wed Dec 11 2019 - 10:42:09 PST)
- Re: [AMBER] GPU installation error (Wed Dec 11 2019 - 10:39:38 PST)
- Re: [AMBER] error (Wed Dec 11 2019 - 08:40:39 PST)
- Re: [AMBER] error (Tue Dec 10 2019 - 04:46:18 PST)
- Re: [AMBER] Warning: 2 or more molecules (3 and 4) share residue numbers (1003). (Fri Dec 06 2019 - 05:32:42 PST)
- Re: [AMBER] Equilibriation input file for TI (Fri Dec 06 2019 - 05:28:04 PST)
- Re: [AMBER] Fixed Minimization (Fri Dec 06 2019 - 05:26:13 PST)
- Re: [AMBER] TI on gpus (Thu Dec 05 2019 - 05:58:10 PST)
- Re: [AMBER] Sequential equilibration versus parallel runs in TI (Thu Dec 05 2019 - 05:54:39 PST)
David Case
- Re: [AMBER] some queries (Mon Dec 30 2019 - 06:13:58 PST)
- Re: [AMBER] Which language could tleap know? (Thu Dec 26 2019 - 06:39:08 PST)
- Re: [AMBER] Tleap naming problem (Thu Dec 26 2019 - 06:35:43 PST)
- Re: [AMBER] Error during installation (Tue Dec 24 2019 - 06:52:26 PST)
- Re: [AMBER] Amber18-bash: logFile: command not found... (Tue Dec 24 2019 - 06:43:07 PST)
- Re: [AMBER] help needed for failed installation of CUDA for GPU-accelerated versions of pmemd for AMBER 18 (Mon Dec 23 2019 - 18:40:33 PST)
- Re: [AMBER] Minimization equilibration of protein+ligand prior to TI setup (Mon Dec 23 2019 - 18:36:42 PST)
- Re: [AMBER] Amber18 installation problem (Fri Dec 20 2019 - 14:05:03 PST)
- Re: [AMBER] amber update issue (Fri Dec 20 2019 - 09:18:56 PST)
- Re: [AMBER] cpptraj.MPI versus cpptraj (Thu Dec 19 2019 - 19:00:25 PST)
- Re: [AMBER] Attaching Methoxy (OMe) Capping at C-terminal (Thu Dec 19 2019 - 05:01:15 PST)
- Re: [AMBER] If there is a method that can just use the soft-core potential for VDW interaction but not for electrostatic part (Wed Dec 18 2019 - 06:44:15 PST)
- Re: [AMBER] tip4p-d water forcefield parameters (Wed Dec 18 2019 - 06:41:11 PST)
- Re: [AMBER] installing Amber 18 issues (Wed Dec 18 2019 - 06:34:38 PST)
- Re: [AMBER] NVT equilibriation followed by NPT in TI (Tue Dec 17 2019 - 05:38:58 PST)
- Re: [AMBER] nuc.nab:no such file found error (Tue Dec 17 2019 - 05:30:32 PST)
- Re: [AMBER] Virtual box with imin = 1 or imin = 5 (Mon Dec 16 2019 - 12:40:13 PST)
- Re: [AMBER] Virtual box with imin = 1 or imin = 5 (Mon Dec 16 2019 - 12:15:34 PST)
- Re: [AMBER] MM-GBSA error (Sat Dec 14 2019 - 06:47:27 PST)
- Re: [AMBER] Error when running MD (Fri Dec 13 2019 - 10:42:10 PST)
- Re: [AMBER] Problems adding molecule on Metal-Water system (Mon Dec 09 2019 - 09:46:38 PST)
- Re: [AMBER] PrmtopError: Complex natom != receptor natom + ligand natom (Mon Dec 09 2019 - 05:28:18 PST)
- Re: [AMBER] Problems adding molecule on Metal-Water system (Sat Dec 07 2019 - 06:07:01 PST)
- Re: [AMBER] help on this error (Sat Dec 07 2019 - 06:03:43 PST)
- Re: [AMBER] Obtaining excess molar volumes using Molecular Dynamics (Tue Dec 03 2019 - 05:51:28 PST)
David Sáez
- [AMBER] Warning: 2 or more molecules (3 and 4) share residue numbers (1003). (Thu Dec 05 2019 - 21:08:38 PST)
- [AMBER] On deprotonated Tyr (Sun Dec 01 2019 - 20:39:54 PST)
Debarati DasGupta
- Re: [AMBER] Minimization equilibration of protein+ligand prior to TI setup (Fri Dec 27 2019 - 08:07:29 PST)
- Re: [AMBER] Minimization equilibration of protein+ligand prior to TI setup (Tue Dec 24 2019 - 06:44:24 PST)
- [AMBER] Minimization equilibration of protein+ligand prior to TI setup (Mon Dec 23 2019 - 12:33:03 PST)
- Re: [AMBER] cpptraj.MPI versus cpptraj (Fri Dec 20 2019 - 05:26:26 PST)
- Re: [AMBER] cpptraj.MPI versus cpptraj (Fri Dec 20 2019 - 05:24:54 PST)
- Re: [AMBER] cpptraj.MPI versus cpptraj (Fri Dec 20 2019 - 05:18:43 PST)
- [AMBER] cpptraj.MPI versus cpptraj (Thu Dec 19 2019 - 11:51:47 PST)
- Re: [AMBER] NVT equilibriation followed by NPT in TI (Tue Dec 17 2019 - 06:54:15 PST)
- [AMBER] Any idea on this error and how to troubleshoot (Mon Dec 16 2019 - 10:43:46 PST)
- [AMBER] NVT equilibriation followed by NPT in TI (Mon Dec 16 2019 - 06:30:48 PST)
- [AMBER] FESetup (Sun Dec 15 2019 - 14:14:34 PST)
- Re: [AMBER] Flexible protein! (Fri Dec 13 2019 - 11:37:26 PST)
- [AMBER] Flexible protein! (Thu Dec 12 2019 - 10:26:20 PST)
- [AMBER] Timestep (dt) in TI calculations (Sun Dec 08 2019 - 06:30:03 PST)
- Re: [AMBER] help on this error (Fri Dec 06 2019 - 13:08:29 PST)
- Re: [AMBER] Equilibriation input file for TI (Fri Dec 06 2019 - 07:57:28 PST)
- Re: [AMBER] help on this error (Fri Dec 06 2019 - 05:24:08 PST)
- [AMBER] TI calculations linear scaling of atoms! (Thu Dec 05 2019 - 15:01:21 PST)
- [AMBER] Equilibriation input file for TI (Thu Dec 05 2019 - 14:35:23 PST)
- Re: [AMBER] TI calculation steps (Thu Dec 05 2019 - 13:46:44 PST)
- Re: [AMBER] TI calculation steps (Thu Dec 05 2019 - 13:39:29 PST)
- [AMBER] TI calculation steps (Thu Dec 05 2019 - 12:24:56 PST)
- Re: [AMBER] TI on gpus (Wed Dec 04 2019 - 10:01:14 PST)
- Re: [AMBER] Sequential equilibration versus parallel runs in TI (Wed Dec 04 2019 - 07:45:57 PST)
- [AMBER] Sequential equilibration versus parallel runs in TI (Wed Dec 04 2019 - 07:45:05 PST)
- [AMBER] Table 21.1 in Thermodynamic Integration section of amber18 manual (Wed Dec 04 2019 - 07:17:42 PST)
- Re: [AMBER] help on this error (Tue Dec 03 2019 - 14:06:17 PST)
Debasish Mandal
- [AMBER] Molecular dynamics of tripeptide like organic molecule (Tue Dec 10 2019 - 20:18:56 PST)
Dr. Anselm Horn
- [AMBER] Conference Announcement: Molecular Modeling Workshop, Feb 17-19, 2020 in Erlangen, Germany (Fri Dec 06 2019 - 01:41:01 PST)
- [AMBER] Announcement: 34th Molecular Modelling Workshop (MMWS) Feb 17-19, 2020 in Erlangen, Germany (Wed Dec 04 2019 - 05:13:39 PST)
- [AMBER] 34th Molecular Modelling Workshop (MMWS) February 17-19, 2020 in Erlangen, Germany (Tue Dec 03 2019 - 01:56:09 PST)
emanuele falbo
- Re: [AMBER] Fixed Minimization (Fri Dec 06 2019 - 07:05:14 PST)
- [AMBER] Fixed Minimization (Thu Dec 05 2019 - 06:15:49 PST)
Erik Zuiderweg
- [AMBER] Figured Amber 16 installation on Mac (Mon Dec 30 2019 - 04:44:19 PST)
- [AMBER] reinstalling Amber 16 + Ambertools 16 on a Mac (Mon Dec 30 2019 - 03:38:59 PST)
Gerald Monard
- Re: [AMBER] Fwd: problem of compiling (Fri Dec 13 2019 - 00:38:05 PST)
- Re: [AMBER] Fwd: problem of compiling (Thu Dec 12 2019 - 23:01:45 PST)
- Re: [AMBER] Fwd: problem of compiling (Thu Dec 12 2019 - 10:46:44 PST)
- Re: [AMBER] problem of compiling (Mon Dec 09 2019 - 01:48:53 PST)
Giulio RASTELLI
- [AMBER] Definition of restraints to avoid ligand aggregation (Sun Dec 22 2019 - 08:06:16 PST)
Gustaf Olsson
- Re: [AMBER] amber 18 installation error (Thu Dec 19 2019 - 22:59:18 PST)
- Re: [AMBER] Problems installing Amber 18 (Tue Dec 17 2019 - 22:49:14 PST)
- Re: [AMBER] Any way of making protein rigid in MD simulation? (Sun Dec 15 2019 - 23:14:30 PST)
Hofer, Florian
- [AMBER] Segmentation Fault when running constant pH Replica Exchange on GPUs (Fri Dec 06 2019 - 07:52:01 PST)
Horn, Anselm
- Re: [AMBER] Charge distribution in molecule (Sun Dec 01 2019 - 23:37:51 PST)
Hosein Geraili Daronkola
- [AMBER] Ti on pmemd.CUDA (Thu Dec 12 2019 - 07:22:04 PST)
James Kress
- Re: [AMBER] error (Wed Dec 11 2019 - 09:36:15 PST)
Jerome Eberhardt
- Re: [AMBER] Virtual box with imin = 1 or imin = 5 (Mon Dec 16 2019 - 16:38:15 PST)
- Re: [AMBER] Virtual box with imin = 1 or imin = 5 (Mon Dec 16 2019 - 16:38:09 PST)
- Re: [AMBER] Virtual box with imin = 1 or imin = 5 (Mon Dec 16 2019 - 10:34:52 PST)
- [AMBER] Virtual box with imin = 1 or imin = 5 (Sun Dec 15 2019 - 21:24:26 PST)
Joanna Michelle E. Chua
- Re: [AMBER] installing Amber 18 issues (Tue Dec 17 2019 - 19:01:26 PST)
- Re: [AMBER] installing Amber 18 issues (Tue Dec 17 2019 - 18:50:24 PST)
Jose Christian Flores Canales
- [AMBER] TI support for CHARMM FF (Tue Dec 03 2019 - 04:58:02 PST)
Josh Berryman
- Re: [AMBER] help on this error (Fri Dec 06 2019 - 03:21:58 PST)
Liao
- Re: [AMBER] How to use AMBER on Supercomputer (Sat Dec 21 2019 - 08:07:36 PST)
- Re: [AMBER] How to use AMBER on Supercomputer (Sat Dec 21 2019 - 07:28:20 PST)
- [AMBER] Any way of making protein rigid in MD simulation? (Fri Dec 13 2019 - 20:59:40 PST)
- [AMBER] mm-gbsa with more than one receptor (Thu Dec 12 2019 - 17:42:54 PST)
- [AMBER] mm-gbsa with more than one receptor (Thu Dec 12 2019 - 17:39:01 PST)
- [AMBER] mm-gbsa with more than one receptor (Thu Dec 12 2019 - 17:37:41 PST)
- [AMBER] mm-gbsa with more than one receptor (Thu Dec 12 2019 - 17:42:08 PST)
Lod King
- [AMBER] Chemical education for MD articles (Mon Dec 02 2019 - 12:21:12 PST)
Luca Codutti
- Re: [AMBER] tip4p-d water forcefield parameters (Tue Dec 17 2019 - 08:06:23 PST)
- [AMBER] tip4p-d water forcefield parameters (Tue Dec 17 2019 - 08:03:25 PST)
Lucas Bandeira
- Re: [AMBER] Problems adding molecule on Metal-Water system (Thu Dec 12 2019 - 06:19:09 PST)
- Re: [AMBER] Problems adding molecule on Metal-Water system (Sun Dec 08 2019 - 16:59:40 PST)
- [AMBER] Problems adding molecule on Metal-Water system (Fri Dec 06 2019 - 11:22:44 PST)
maya nair
- [AMBER] Error when running MD (Fri Dec 13 2019 - 09:51:34 PST)
MUHAMMAD KHATTAB FATHI KHATTAB
- Re: [AMBER] How to use AMBER on Supercomputer (Sat Dec 21 2019 - 09:11:32 PST)
- Re: [AMBER] How to use AMBER on Supercomputer (Sat Dec 21 2019 - 07:51:15 PST)
- [AMBER] How to use AMBER on Supercomputer (Fri Dec 20 2019 - 22:49:44 PST)
mwli.mail.ustc.edu.cn
- [AMBER] Which language could tleap know? (Thu Dec 26 2019 - 00:06:22 PST)
MYRIAN TORRES RICO
- Re: [AMBER] error (Thu Dec 12 2019 - 01:13:39 PST)
- Re: [AMBER] error (Wed Dec 11 2019 - 08:05:49 PST)
- Re: [AMBER] error (Tue Dec 10 2019 - 06:59:45 PST)
- [AMBER] error (Tue Dec 10 2019 - 04:27:02 PST)
Neha Gandhi
- [AMBER] mm-gbsa with more than one receptor (Thu Dec 12 2019 - 15:50:11 PST)
Pallab Dutta
- Re: [AMBER] Attaching Methoxy (OMe) Capping at C-terminal (Thu Dec 19 2019 - 06:40:47 PST)
- [AMBER] Attaching Methoxy (OMe) Capping at C-terminal (Thu Dec 19 2019 - 04:15:47 PST)
Pavlína Pokorná
- Re: [AMBER] ff19SB with end-caps pmemd.cuda problem (Tue Dec 17 2019 - 06:21:57 PST)
- Re: [AMBER] ff19SB with end-caps pmemd.cuda problem (Mon Dec 16 2019 - 01:59:01 PST)
- Re: [AMBER] ff19SB with end-caps pmemd.cuda problem (Wed Dec 11 2019 - 09:07:30 PST)
- Re: [AMBER] ff19SB with end-caps pmemd.cuda problem (Wed Dec 11 2019 - 08:50:41 PST)
- Re: [AMBER] ff19SB with end-caps pmemd.cuda problem (Wed Dec 11 2019 - 06:40:06 PST)
- Re: [AMBER] ff19SB with end-caps pmemd.cuda problem (Wed Dec 11 2019 - 05:34:28 PST)
- [AMBER] ff19SB with end-caps pmemd.cuda problem (Wed Dec 11 2019 - 02:37:55 PST)
Petro
- [AMBER] Time shift. (Wed Dec 11 2019 - 23:40:55 PST)
- Re: [AMBER] Molecular dynamics of tripeptide like organic molecule (Tue Dec 10 2019 - 22:19:35 PST)
Qing Lv
- [AMBER] How to deal with Dummy atoms of 4-coordinated Zinc in QM/MM (Fri Dec 20 2019 - 23:13:44 PST)
- Re: [AMBER] MMPBSA mmpbsa_py_energy failed with prmtop (Wed Dec 04 2019 - 23:41:02 PST)
- [AMBER] MMPBSA mmpbsa_py_energy failed with prmtop (Wed Dec 04 2019 - 20:32:05 PST)
Rui Chen
- [AMBER] Tleap naming problem (Wed Dec 25 2019 - 19:53:49 PST)
- Re: [AMBER] MMGB/PBSA parameters (Mon Dec 23 2019 - 10:57:21 PST)
- [AMBER] MMGB/PBSA parameters (Mon Dec 23 2019 - 09:12:44 PST)
- Re: [AMBER] MM-GBSA error (Wed Dec 18 2019 - 09:06:07 PST)
- Re: [AMBER] MMGBSA script file (Mon Dec 16 2019 - 19:57:47 PST)
- [AMBER] MMGBSA script file (Mon Dec 16 2019 - 16:27:40 PST)
- [AMBER] question about Tleap (Mon Dec 16 2019 - 10:19:27 PST)
- Re: [AMBER] MM-GBSA error (Fri Dec 13 2019 - 19:49:26 PST)
- [AMBER] MM-GBSA error (Thu Dec 12 2019 - 18:31:57 PST)
Saikat Pal
- [AMBER] AMBER 18 cuda installation (Mon Dec 23 2019 - 05:33:19 PST)
- [AMBER] amber update issue (Thu Dec 19 2019 - 23:39:52 PST)
- [AMBER] amber 18 installation error (Thu Dec 19 2019 - 22:46:05 PST)
Sarah Fegan - UKRI STFC
- Re: [AMBER] FESetup (Mon Dec 16 2019 - 00:56:53 PST)
Seibold, Steve Allan
- [AMBER] GaMD problems with different computers. (Thu Dec 12 2019 - 11:12:25 PST)
SHAUNAK BADANI
- [AMBER] Parameters to be used for protein in implicit solvent (Fri Dec 27 2019 - 03:54:08 PST)
Song, Lin
- Re: [AMBER] TI calculation steps (Thu Dec 05 2019 - 13:45:55 PST)
- Re: [AMBER] TI calculation steps (Thu Dec 05 2019 - 13:25:39 PST)
Sruthi Sudhakar
- Re: [AMBER] nuc.nab:no such file found error (Tue Dec 17 2019 - 20:23:51 PST)
- [AMBER] nuc.nab:no such file found error (Mon Dec 16 2019 - 20:44:15 PST)
- Re: [AMBER] GPU installation error (Wed Dec 11 2019 - 19:41:30 PST)
- [AMBER] GPU installation error (Wed Dec 11 2019 - 09:47:45 PST)
Sushil Mishra
- Re: [AMBER] FESetup (Sun Dec 15 2019 - 22:12:32 PST)
venkat
- Re: [AMBER] Found an invalid periodicity in the prmtop file : MMPBSA (Thu Dec 12 2019 - 03:57:16 PST)
- [AMBER] Found an invalid periodicity in the prmtop file : MMPBSA (Thu Dec 12 2019 - 03:31:40 PST)
- [AMBER] Found an invalid periodicity in the prmtop file : MMPBSA (Wed Dec 11 2019 - 08:13:02 PST)
wangjianing_mail
- [AMBER] If there is a method that can just use the soft-core potential for VDW interaction but not for electrostatic part (Tue Dec 17 2019 - 22:17:07 PST)
Xin Bai
- [AMBER] User-defined high precision AMBER trajectory file formats (Thu Dec 12 2019 - 03:12:01 PST)
Zhonghua Xia
- [AMBER] How can I get solute-solute energy information? (Fri Dec 06 2019 - 05:36:35 PST)
- [AMBER] How can I get solute-solute energy information? (Fri Dec 06 2019 - 04:04:38 PST)
东庚
- [AMBER] Interaction entropy program （Geng Dong） (Wed Dec 25 2019 - 17:52:55 PST)
辛志宏
- [AMBER] Amber18-bash: logFile: command not found... (Mon Dec 23 2019 - 19:03:49 PST)

Amber Archive Dec 2019 by author