Hello everyone,
An error occured when I add force field file in amber18, and find the location of leaprc.protein.ff14SB, and run again, the error is the same.
#source leaprc.protein.ff14SB
bash: logFile: command not found...
bash: addAtomTypes: command not found...
bash: leaprc.protein.ff14SB: line 128: syntax error: unexpected end of file
#locate leaprc.protein.ff14SB
/home/xzhfood/amber/amber18/dat/leap/cmd/leaprc.protein.ff14SB
/home/xzhfood/amber/amber18/dat/leap/cmd/leaprc.protein.ff14SBonlysc
/opt/UCSF/Chimera64-1.13.1/bin/amber16/dat/leap/cmd/leaprc.protein.ff14SB
/opt/UCSF/Chimera64-1.13.1/bin/amber16/dat/leap/cmd/leaprc.protein.ff14SBonlysc
#source /home/xzhfood/amber/amber18/dat/leap/cmd/leaprc.protein.ff14SB
bash: logFile: command not found...
bash: addAtomTypes: command not found...
bash: /home/xzhfood/amber/amber18/dat/leap/cmd/leaprc.protein.ff14SB: line 130: syntax error: unexpected end of file
I added the following path into the ~/.bash_profile and run source again, the error is still there
PATH=$PATH:$HOME/bin:/sbin:/usr/bin:/usr/sbin
How to fix it, thank you for your help.
Xiaoming zhang
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Received on Mon Dec 23 2019 - 19:30:02 PST
