Hi all,
I just installed amber18 with ambertools19 in WSL Ubuntu 18.04 on my Asus
laptop having AMD RYZEN5 processor
The installation was error free until the make test which gives the
following error
-----------------
test -f /mnt/d/amber/amber18/amber.csh && source
/mnt/d/amber/amber18/amber.csh (csh/tcsh)
to your login shell resource file (e.g., ~/.bashrc or ~/.cshrc).
Makefile:14: recipe for target 'test.parallel' failed
make[1]: *** [test.parallel] Error 1
make[1]: Leaving directory '/mnt/d/amber/amber18/AmberTools/test'
Makefile:91: recipe for target 'test.parallel' failed
make: [test.parallel] Error 2 (ignored)
make[1]: Entering directory '/mnt/d/amber/amber18/test'
./test_amber_clean.sh
make[2]: Entering directory '/mnt/d/amber/amber18/test/cuda/remd'
make[3]: Entering directory '/mnt/d/amber/amber18/test/cuda/remd'
make[3]: Leaving directory '/mnt/d/amber/amber18/test/cuda/remd'
make[2]: Leaving directory '/mnt/d/amber/amber18/test/cuda/remd'
./test_amber_parallel.sh
Tests being run with DO_PARALLEL="mpirun -np 2".
Error: Could not import Amber Python modules!
Probably your Amber Python environment was not set up correctly.
We recommend adding the line:
test -f /mnt/d/amber/amber18/amber.sh && source
/mnt/d/amber/amber18/amber.sh (sh/bash/zsh)
or
test -f /mnt/d/amber/amber18/amber.csh && source
/mnt/d/amber/amber18/amber.csh (csh/tcsh)
to your login shell resource file (e.g., ~/.bashrc or ~/.cshrc).
Makefile:18: recipe for target 'test.parallel' failed
make[1]: *** [test.parallel] Error 1
make[1]: Leaving directory '/mnt/d/amber/amber18/test'
Summary of AmberTools parallel tests:
984 file comparisons passed
165 file comparisons failed
84 tests experienced errors
Test log file saved as
/mnt/d/amber/amber18/logs/test_at_parallel/2019-12-28_16-21-07.log
Test diffs file saved as
/mnt/d/amber/amber18/logs/test_at_parallel/2019-12-28_16-21-07.diff
----------------------------------------
i want to ask how to resolve the issue.
also when I was doing my installation I did use the following command line
./configure -noX11 --skip-python gnu
in case i did not use --skip-python, it was informing me that Miniconda
will be installed however, it gave an error that it cannot do so due to
python error although I have python 2.7.17 installed.
is there an issue running amber?
when I type tleap, I get
ayesha.LAPTOP-C5K9759P:/mnt/d/amber/amber18$ tleap
-I: Adding /mnt/d/amber/amber18/dat/leap/prep to search path.
-I: Adding /mnt/d/amber/amber18/dat/leap/lib to search path.
-I: Adding /mnt/d/amber/amber18/dat/leap/parm to search path.
-I: Adding /mnt/d/amber/amber18/dat/leap/cmd to search path.
Welcome to LEaP!
(no leaprc in search path)
>
I shall be grateful for your help.
thank you
regards
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Received on Sun Dec 29 2019 - 09:00:02 PST
