[AMBER] Equilibriation input file for TI

From: Debarati DasGupta <debarati_dasgupta.hotmail.com>
Date: Thu, 5 Dec 2019 22:35:23 +0000

&cntrl
    imin = 0, nstlim = 1000000, dt = 0.002,
    irest = 1, ntx = 5, ig = -1,
    tempi = 300.0, temp0 = 300.0,
    ntc = 2, ntf = 1, tol = 0.00001,
    taup = 1,
    ntwx = 10000, ntwe = 0, ntwr = 1000, ntpr = 1000,
    cut = 10.0, iwrap = 1,
    ntt =3, ntb = 2, ntp = 1, gamma_ln=1.0,
    nscm = 0,
    ntr=1, restraintmask=':287', restraint_wt=100,
    icfe = 1, clambda = 0.08198, ifsc=1,
    timask1=':C3N',timask2='',

Any suggestions on what should be the taup value set to ? I know the default is one but do we need to play with it.
In one tutorial I found it to be set at 0.5, is it not too stringent for pressure relaxation?
Thanks
Debarati

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Received on Thu Dec 05 2019 - 15:00:02 PST
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