Dear AMBER Community,
I'm trying to add a glycerol molecule in my metal-water system, but I get
the following message on my terminal:
GetPDB >> Found 5178 atoms in interfaceNaOH.pdb.
GetPDB >> Bracketed 2708 residues.
GetPDB >> Found 13 atoms in NaOHGlycerol/AmberGlyceroxide.pdb.
GetPDB >> Bracketed 1 residues.
AddToBox >> Examining residue 0
AddToBox >> Added 0 residues.
I've analyzed the pdf file and all the spacing is OK. I'm sending the file
in attachment so you can verify it.
The command I'm using is:
AddToBox -c interfaceNaOH.pdb -a NaOHGlycerol/AmberGlyceroxide.pdb -na 10
-P 5178 -o interfaceGlycerol.pdb -RW 2.5 -RP 2.5 -G 0.1 -V
Hope you can help me,
Lucas Bandeira
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Received on Fri Dec 06 2019 - 11:30:02 PST
