[AMBER] Parameters to be used for protein in implicit solvent

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From: SHAUNAK BADANI <shaunak.badani.research.iiit.ac.in>
Date: Fri, 27 Dec 2019 11:54:08 +0000

Hi,

We have a system containing a protein, and we would like to know what are the implicit solvent parameters to be used when conducting molecular dynamic runs on it.
We are curently using the `igb = 1` option, which gives us Hawkins, Cramer, Truhlar generalized born models as per the Amber18 manual.

Regards,
Shaunak Badani,
3rd Year Undergraduate Student,
International Institute of Information Technology.

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Received on Fri Dec 27 2019 - 04:00:02 PST