I see.
It works now.
thanks a lot
On 12/13/2019 03:01 PM, Gerald Monard wrote:
> Hello,
>
> Can you try:
>
> ./configure --with-python /usr/bin/python3 gnu
>
> please?
>
> Thanks,
>
> Gerald.
>
> P.S.: with the miniconda installation, when I apply the fix:
>
> /bin/rm $AMBERHOME/miniconda/compiler_compat/ld
> ln -s /usr/bin/ld $AMBERHOME/miniconda/compiler_compat/ld
>
> then the problem you have is solved. Are you sure that if you do `ls
> -l miniconda/compiler_compat/ld` you get something like
> `miniconda/compiler_compat/ld -> /usr/bin/ld`
>
>
>
> On 12/13/19 01:44, Albert wrote:
>> yes, I applied that before I compiling it. But the problem is still
>> there.
>>
>>
>> On 12/13/2019 02:46 AM, Gerald Monard wrote:
>>> Hello,
>>>
>>> Did you applied the solution described at
>>> http://ambermd.org/Installation.php for OpenSuse?
>>>
>>> Gerald.
>>>
>>> On 12/12/19 01:21, Albert wrote:
>>>
>>>> Hello,
>>>>
>>>> I am trying to compile Amber18+AmberTool19 in my opensuse 15.1 x64 OS
>>>> with command line:
>>>>
>>>> ./configure gnu
>>>>
>>>> but it always failed with the following messages:
>>>>
>>>> I am using gcc-8
>>>>
>>>> ----------------------------
>>>>
>>>> cc1plus: warning: command line option ‘-Wstrict-prototypes’ is
>>>> valid for
>>>> C/ObjC but not for C++
>>>> cc1plus: warning: command line option ‘-Wstrict-prototypes’ is
>>>> valid for
>>>> C/ObjC but not for C++
>>>> src/readparm.cpp: In function ‘ExitStatus readparm(const string&,
>>>> std::vector<std::__cxx11::basic_string<char> >&, ParmDataMap&,
>>>> ParmStringMap&, ParmStringMap&, ParmFormatMap&,
>>>> std::__cxx11::string&)’:
>>>> src/readparm.cpp:143:28: warning: ‘char* strncpy(char*, const char*,
>>>> size_t)’ specified bound 8 equals destination size
>>>> [-Wstringop-truncation]
>>>> strncpy(d.c, word.c_str(),
>>>> MAX_HOLLERITH_SIZE);
>>>> ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>>> /soft/amber/18/miniconda/compiler_compat/ld:
>>>> /usr/lib64/gcc/x86_64-suse-linux/8/../../../../lib64/crti.o: unable to
>>>> initialize decompress status for section .debug_aranges
>>>> /soft/amber/18/miniconda/compiler_compat/ld:
>>>> /usr/lib64/gcc/x86_64-suse-linux/8/../../../../lib64/crti.o: unable to
>>>> initialize decompress status for section .debug_aranges
>>>> /soft/amber/18/miniconda/compiler_compat/ld:
>>>> /usr/lib64/gcc/x86_64-suse-linux/8/../../../../lib64/crti.o: unable to
>>>> initialize decompress status for section .debug_aranges
>>>> /soft/amber/18/miniconda/compiler_compat/ld:
>>>> /usr/lib64/gcc/x86_64-suse-linux/8/../../../../lib64/crti.o: unable to
>>>> initialize decompress status for section .debug_aranges
>>>> /usr/lib64/gcc/x86_64-suse-linux/8/../../../../lib64/crti.o: file not
>>>> recognized: file format not recognized
>>>> collect2: error: ld returned 1 exit status
>>>> error: command 'g++' failed with exit status 1
>>>> make[2]: *** [Makefile:525: parmed] Error 1
>>>> make[2]: Leaving directory '/soft/amber/18/AmberTools/src'
>>>> make[1]: *** [Makefile:56: serial] Error 2
>>>> make[1]: Leaving directory '/soft/amber/18/AmberTools/src'
>>>> make: *** [Makefile:7: install] Error 2
>>>> ------------------------------------------------
>>>>
>>>>
>>>> Thank you very much
>>>>
>>>> Albert
>>>>
>>>>
>>>> _______________________________________________
>>>> AMBER mailing list
>>>> AMBER.ambermd.org
>>>> http://lists.ambermd.org/mailman/listinfo/amber
>>
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Received on Thu Dec 12 2019 - 23:30:02 PST
