Nice to hear it. Which solution works?Gerald.Envoyé depuis mon smartphone.
-------- Message d'origine --------De : Albert <mailmd2011.gmail.com> Date : 13/12/2019 10:16 (GMT+03:00) À : Gerald Monard <Gerald.Monard.univ-lorraine.fr>, AMBER Mailing List <amber.ambermd.org> Objet : Re: [AMBER] Fwd: problem of compiling I see.It works now.thanks a lotOn 12/13/2019 03:01 PM, Gerald Monard wrote:> Hello,>> Can you try:>> ./configure --with-python /usr/bin/python3 gnu>> please?>> Thanks,>> Gerald.>> P.S.: with the miniconda installation, when I apply the fix:>> /bin/rm $AMBERHOME/miniconda/compiler_compat/ld> ln -s /usr/bin/ld $AMBERHOME/miniconda/compiler_compat/ld>> then the problem you have is solved. Are you sure that if you do `ls > -l miniconda/compiler_compat/ld` you get something like > `miniconda/compiler_compat/ld -> /usr/bin/ld`>>>> On 12/13/19 01:44, Albert wrote:>> yes, I applied that before I compiling it. But the problem is still >> there.>>>>>> On 12/13/2019 02:46 AM, Gerald Monard wrote:>>> Hello,>>>>>> Did you applied the solution described at>>> http://ambermd.org/Installation.php for OpenSuse?>>>>>> Gerald.>>>>>> On 12/12/19 01:21, Albert wrote:>>>>>>> Hello,>>>>>>>> I am trying to compile Amber18+AmberTool19 in my opensuse 15.1 x64 OS>>>> with command line:>>>>>>>> ./configure gnu>>>>>>>> but it always failed with the following messages:>>>>>>>> I am using gcc-8>>>>>>>> ---------------------------->>>>>>>> cc1plus: warning: command line option ‘-Wstrict-prototypes’ is >>>> valid for>>>> C/ObjC but not for C++>>>> cc1plus: warning: command line option ‘-Wstrict-prototypes’ is >>>> valid for>>>> C/ObjC but not for C++>>>> src/readparm.cpp: In function ‘ExitStatus readparm(const string&,>>>> std::vector<std::__cxx11::basic_string<char> >&, ParmDataMap&,>>>> ParmStringMap&, ParmStringMap&, ParmFormatMap&, >>>> std::__cxx11::string&)’:>>>> src/readparm.cpp:143:28: warning: ‘char* strncpy(char*, const char*,>>>> size_t)’ specified bound 8 equals destination size >>>> [-Wstringop-truncation]>>>> strncpy(d.c, word.c_str(), >>>> MAX_HOLLERITH_SIZE);>>>> ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~>>>> /soft/amber/18/miniconda/compiler_compat/ld:>>>> /usr/lib64/gcc/x86_64-suse-linux/8/../../../../lib64/crti.o: unable to>>>> initialize decompress status for section .debug_aranges>>>> /soft/amber/18/miniconda/compiler_compat/ld:>>>> /usr/lib64/gcc/x86_64-suse-linux/8/../../../../lib64/crti.o: unable to>>>> initialize decompress status for section .debug_aranges>>>> /soft/amber/18/miniconda/compiler_compat/ld:>>>> /usr/lib64/gcc/x86_64-suse-linux/8/../../../../lib64/crti.o: unable to>>>> initialize decompress status for section .debug_aranges>>>> /soft/amber/18/miniconda/compiler_compat/ld:>>>> /usr/lib64/gcc/x86_64-suse-linux/8/../../../../lib64/crti.o: unable to>>>> initialize decompress status for section .debug_aranges>>>> /usr/lib64/gcc/x86_64-suse-linux/8/../../../../lib64/crti.o: file not>>>> recognized: file format not recognized>>>> collect2: error: ld returned 1 exit status>>>> error: command 'g++' failed with exit status 1>>>> make[2]: *** [Makefile:525: parmed] Error 1>>>> make[2]: Leaving directory '/soft/amber/18/AmberTools/src'>>>> make[1]: *** [Makefile:56: serial] Error 2>>>> make[1]: Leaving directory '/soft/amber/18/AmberTools/src'>>>> make: *** [Makefile:7: install] Error 2>>>> ------------------------------------------------>>>>>>>>>>>> Thank you very much>>>>>>>> Albert>>>>>>>>>>>> _______________________________________________>>>> AMBER mailing list>>>> AMBER.ambermd.org>>>> http://lists.ambermd.org/mailman/listinfo/amber>>
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Received on Fri Dec 13 2019 - 01:00:02 PST
