Amber Archive Jan 2007 By Thread
- Re: AMBER: G5 OSX serial compile error Mengjuei Hsieh (Mon Jan 01 2007 - 02:16:12 PST)
- Re: AMBER: G5 OSX serial compile error Kevin Kelliher (Fri Jan 05 2007 - 10:58:56 PST)
- Re: AMBER: G5 OSX serial compile error Mengjuei Hsieh (Mon Jan 08 2007 - 16:26:26 PST)
- Re: AMBER: G5 OSX serial compile error Kevin Kelliher (Fri Jan 05 2007 - 10:58:56 PST)
- Re: AMBER: AMBER complile problem Chengwen Chen (Mon Jan 01 2007 - 19:19:08 PST)
- AMBER: fluctuations Jardas sucuriba (Tue Jan 02 2007 - 07:21:22 PST)
- AMBER: Deep energetics problem sai vikram (Tue Jan 02 2007 - 09:10:19 PST)
- RE: AMBER: Deep energetics problem Ross Walker (Tue Jan 02 2007 - 11:12:53 PST)
- Re: AMBER: Deep energetics problem sai vikram (Wed Jan 03 2007 - 00:26:42 PST)
- RE: AMBER: Deep energetics problem Ross Walker (Tue Jan 02 2007 - 11:12:53 PST)
- AMBER: Distance Restraints Problem Esther Brugger (Tue Jan 02 2007 - 14:00:16 PST)
- Re: AMBER: Distance Restraints Problem David A. Case (Tue Jan 02 2007 - 15:37:18 PST)
- Re: AMBER: problems trying to modify Amber8 David A. Case (Tue Jan 02 2007 - 15:53:36 PST)
- AMBER: assign atom hybrid xiaoqin huang (Tue Jan 02 2007 - 17:54:52 PST)
- AMBER: amber9 installation error Seaclear Theory (Tue Jan 02 2007 - 18:10:12 PST)
- Re: AMBER: amber9 installation error David A. Case (Tue Jan 02 2007 - 23:00:50 PST)
- Re: AMBER: amber9 installation error Seaclear Theory (Wed Jan 03 2007 - 07:55:51 PST)
- Re: AMBER: amber9 installation error David A. Case (Wed Jan 03 2007 - 18:05:35 PST)
- Re: AMBER: amber9 installation error Seaclear Theory (Wed Jan 03 2007 - 20:34:49 PST)
- Re: AMBER: amber9 installation error Seaclear Theory (Thu Jan 04 2007 - 13:27:14 PST)
- Re: AMBER: amber9 installation error Seaclear Theory (Wed Jan 03 2007 - 10:04:27 PST)
- Re: AMBER: amber9 installation error Seaclear Theory (Wed Jan 03 2007 - 07:55:51 PST)
- Re: AMBER: amber9 installation error David A. Case (Tue Jan 02 2007 - 23:00:50 PST)
- AMBER: Re:tree name generated by tleap is different from the input PREP parameter file xiaoqin huang (Tue Jan 02 2007 - 18:41:13 PST)
- Re: AMBER: Re:tree name generated by tleap is different from the input PREP parameter file Bill Ross (Tue Jan 02 2007 - 20:26:14 PST)
- Re: AMBER: Re:tree name generated by tleap is different from the input PREP parameter file xiaoqin huang (Wed Jan 03 2007 - 07:05:18 PST)
- AMBER: H-bond in ptraj nag raj (Wed Jan 03 2007 - 04:17:51 PST)
- Re: AMBER: H-bond in ptraj Jianyin Shao (Thu Jan 04 2007 - 11:49:38 PST)
- Re: AMBER: H-bond in ptraj nag raj (Thu Jan 04 2007 - 20:34:59 PST)
- Re: AMBER: H-bond in ptraj Barbault Florent (Fri Jan 05 2007 - 00:20:22 PST)
- Re: AMBER: H-bond in ptraj nag raj (Fri Jan 05 2007 - 23:22:10 PST)
- AMBER: H-bond in each fram nag raj (Sun Jan 07 2007 - 21:49:57 PST)
- Re: AMBER: H-bond in ptraj nag raj (Thu Jan 04 2007 - 20:34:59 PST)
- Re: AMBER: H-bond in ptraj Jianyin Shao (Thu Jan 04 2007 - 11:49:38 PST)
- AMBER: torsion angle penalty calculation Mike Summers (Wed Jan 03 2007 - 07:18:34 PST)
- Re: AMBER: torsion angle penalty calculation David A. Case (Wed Jan 03 2007 - 08:54:33 PST)
- Re: AMBER: torsion angle penalty calculationy Mike Summers (Wed Jan 03 2007 - 10:13:24 PST)
- AMBER: MPI is slower than single processor with water Mike Summers (Tue Jan 16 2007 - 08:30:18 PST)
- RE: AMBER: MPI is slower than single processor with water Ross Walker (Tue Jan 16 2007 - 08:50:36 PST)
- Re: AMBER: MPI is slower than single processor with water Mike Summers (Tue Jan 16 2007 - 09:32:53 PST)
- RE: AMBER: MPI is slower than single processor with water Yu Chen (Tue Jan 16 2007 - 12:23:23 PST)
- RE: AMBER: MPI is slower than single processor with water Ross Walker (Tue Jan 16 2007 - 08:50:36 PST)
- Re: AMBER: torsion angle penalty calculation David A. Case (Wed Jan 03 2007 - 08:54:33 PST)
- AMBER: installing amber 8 on 5 nodes cluster PC Syed Tarique Moin (Wed Jan 03 2007 - 08:44:54 PST)
- Re: AMBER: installing amber 8 on 5 nodes cluster PC David A. Case (Wed Jan 03 2007 - 09:26:17 PST)
- Re: AMBER: installing amber 8 on 5 nodes cluster PC Syed Tarique Moin (Wed Jan 03 2007 - 10:25:45 PST)
- AMBER: mm_pbsa problems Jardas sucuriba (Tue Jan 30 2007 - 07:55:00 PST)
- Re: AMBER: installing amber 8 on 5 nodes cluster PC David A. Case (Wed Jan 03 2007 - 09:26:17 PST)
- AMBER: How to get a periodic box of modified water molecules Li Su (Wed Jan 03 2007 - 09:25:11 PST)
- Re: AMBER: How to get a periodic box of modified water molecules David A. Case (Wed Jan 03 2007 - 22:04:10 PST)
- AMBER: AMBER citation questions caoch.cherry.bio.titech.ac.jp (Thu Jan 04 2007 - 00:59:08 PST)
- Re: AMBER: AMBER citation questions Carlos Simmerling (Thu Jan 04 2007 - 03:36:28 PST)
- AMBER: AMBER citation questions caoch.cherry.bio.titech.ac.jp (Thu Jan 04 2007 - 00:59:08 PST)
- Re: AMBER: How to get a periodic box of modified water molecules David A. Case (Wed Jan 03 2007 - 22:04:10 PST)
- AMBER: Distance Restraints Esther Brugger (Wed Jan 03 2007 - 12:29:26 PST)
- Re: AMBER: Distance Restraints Esther Brugger (Wed Jan 03 2007 - 14:04:03 PST)
- AMBER: Preprocessor Error: _qmmm_module.f "Extra Characters..." Mike Hanby (Wed Jan 03 2007 - 14:53:43 PST)
- RE: AMBER: Preprocessor Error: _qmmm_module.f "Extra Characters..." Ross Walker (Wed Jan 03 2007 - 15:34:23 PST)
- Re: AMBER: Distance Restraints Esther Brugger (Fri Jan 05 2007 - 07:17:38 PST)
- AMBER: Preprocessor Error: _qmmm_module.f "Extra Characters..." Mike Hanby (Wed Jan 03 2007 - 14:53:43 PST)
- Re: AMBER: Distance Restraints Esther Brugger (Wed Jan 03 2007 - 14:04:03 PST)
- AMBER: NH3 potential Jennie Thomas (Wed Jan 03 2007 - 13:00:28 PST)
- AMBER: H-acceptors problem in ptraj nag raj (Wed Jan 03 2007 - 21:20:09 PST)
- AMBER: The unperturbed charge of the unit: -20.999999 is not zero. saurabh agrawal (Wed Jan 03 2007 - 23:03:49 PST)
- Re: AMBER: The unperturbed charge of the unit: -20.999999 is not zero. Nitin Bhardwaj (Thu Jan 04 2007 - 07:54:39 PST)
- Re: AMBER: The unperturbed charge of the unit: -20.999999 is not zero. Carlos Simmerling (Thu Jan 04 2007 - 11:31:29 PST)
- AMBER: 22 improper torsions in old prep form saurabh agrawal (Thu Jan 04 2007 - 22:29:21 PST)
- Re: AMBER: The unperturbed charge of the unit: -20.999999 is not zero. Carlos Simmerling (Thu Jan 04 2007 - 11:31:29 PST)
- Re: AMBER: The unperturbed charge of the unit: -20.999999 is not zero. Nitin Bhardwaj (Thu Jan 04 2007 - 07:54:39 PST)
- AMBER: intra-molecular h-bonds in ptraj lily ferreira (Thu Jan 04 2007 - 07:17:37 PST)
- Re: AMBER: intra-molecular h-bonds in ptraj Jianyin Shao (Thu Jan 04 2007 - 12:11:36 PST)
- AMBER: enzyme kinetics in silico Sean Rathlef (Thu Jan 04 2007 - 09:24:46 PST)
- Re: AMBER: enzyme kinetics in silico Suxin Zheng (Thu Jan 04 2007 - 09:54:47 PST)
- Re: AMBER: enzyme kinetics in silico Fenghui Fan (Thu Jan 04 2007 - 13:34:41 PST)
- Fwd: AMBER: Atoms overlapping Nitin Bhardwaj (Thu Jan 04 2007 - 16:58:26 PST)
- Re : AMBER: intra-molecular h-bonds in ptraj lily ferreira (Fri Jan 05 2007 - 05:37:52 PST)
- Re: Re : AMBER: intra-molecular h-bonds in ptraj Esther Brugger (Fri Jan 05 2007 - 07:11:43 PST)
- Re: Re : AMBER: intra-molecular h-bonds in ptraj Thomas Cheatham (Sun Jan 07 2007 - 20:51:29 PST)
- Re: AMBER: 22 improper torsions in old prep form Bill Ross (Fri Jan 05 2007 - 10:39:23 PST)
- AMBER: How to change the force field equation in amber by programming... Gobind Singh Bisht (Fri Jan 05 2007 - 11:55:22 PST)
- Re: AMBER: How to change the force field equation in amber by programming... David A. Case (Fri Jan 05 2007 - 13:34:41 PST)
- Re: AMBER: How to change the force field equation in amber by programming... Gobind Singh Bisht (Sun Jan 07 2007 - 06:06:06 PST)
- Re: AMBER: How to change the force field equation in amber by programming... David A. Case (Mon Jan 08 2007 - 15:00:10 PST)
- AMBER: unsubscribe Perdita Barran (Sun Jan 07 2007 - 10:13:40 PST)
- Re: AMBER: How to change the force field equation in amber by programming... Gobind Singh Bisht (Sun Jan 07 2007 - 06:06:06 PST)
- Re: AMBER: How to change the force field equation in amber by programming... David A. Case (Fri Jan 05 2007 - 13:34:41 PST)
- AMBER: Hydrogen in a phosphate ion Nitin Bhardwaj (Fri Jan 05 2007 - 14:00:09 PST)
- Re: AMBER: Hydrogen in a phosphate ion David A. Case (Tue Jan 09 2007 - 11:46:43 PST)
- AMBER: Simulation of a charged system Kijeong Kwac (Fri Jan 05 2007 - 15:08:42 PST)
- Re: AMBER: Simulation of a charged system Carlos Simmerling (Fri Jan 05 2007 - 15:41:02 PST)
- AMBER: question about the testing of AMBER9 Shaoqing.Zhang.mail.uh.edu (Fri Jan 05 2007 - 18:25:16 PST)
- Re: AMBER: question about the testing of AMBER9 David A. Case (Fri Jan 05 2007 - 20:54:53 PST)
- Re: AMBER: question about the testing of AMBER9 Shaoqing.Zhang.mail.uh.edu (Sat Jan 06 2007 - 15:07:04 PST)
- RE: AMBER: question about the testing of AMBER9 Ross Walker (Sat Jan 06 2007 - 15:37:06 PST)
- Re: RE: AMBER: question about the testing of AMBER9 Shaoqing.Zhang.mail.uh.edu (Sun Jan 07 2007 - 13:25:39 PST)
- Re: AMBER: question about the testing of AMBER9 Mark Williamson (Sun Jan 07 2007 - 15:36:28 PST)
- Re: AMBER: question about the testing of AMBER9 Shaoqing.Zhang.mail.uh.edu (Sun Jan 07 2007 - 17:18:05 PST)
- Re: AMBER: question about the testing of AMBER9 Mark Williamson (Mon Jan 08 2007 - 01:36:55 PST)
- Re: AMBER: question about the testing of AMBER9 Shaoqing.Zhang.mail.uh.edu (Mon Jan 08 2007 - 09:06:18 PST)
- RE: AMBER: question about the testing of AMBER9 Ross Walker (Mon Jan 08 2007 - 11:52:55 PST)
- Re: AMBER: question about the testing of AMBER9 Mark Williamson (Mon Jan 08 2007 - 13:10:53 PST)
- Re: AMBER: question about the testing of AMBER9 Shaoqing.Zhang.mail.uh.edu (Mon Jan 08 2007 - 13:56:44 PST)
- Re: AMBER: question about the testing of AMBER9 Andreas Svrcek-Seiler (Mon Jan 08 2007 - 03:15:58 PST)
- Re: AMBER: question about the testing of AMBER9 Shaoqing.Zhang.mail.uh.edu (Sat Jan 06 2007 - 15:07:04 PST)
- RE: AMBER: question about the testing of AMBER9 Bill Ross (Mon Jan 08 2007 - 12:05:19 PST)
- Re: AMBER: question about the testing of AMBER9 David A. Case (Fri Jan 05 2007 - 20:54:53 PST)
- AMBER: entropy units Giulio Rastelli (Mon Jan 08 2007 - 02:33:19 PST)
- AMBER: How to do minimization.. sai vikram (Mon Jan 08 2007 - 07:30:59 PST)
- RE: AMBER: How to do minimization.. Ross Walker (Mon Jan 08 2007 - 08:32:09 PST)
- AMBER: improper torsions Ed Pate (Mon Jan 08 2007 - 11:08:36 PST)
- Re: AMBER: improper torsions Fenghui Fan (Mon Jan 08 2007 - 11:45:09 PST)
- Re: AMBER: improper torsions Bill Ross (Mon Jan 08 2007 - 12:00:06 PST)
- Re: AMBER: Installation help - SGI Altix 350 bertrand russell (Mon Jan 08 2007 - 23:17:54 PST)
- RE: AMBER: Installation help - SGI Altix 350 Ross Walker (Tue Jan 09 2007 - 08:18:55 PST)
- Re: AMBER: Installation help - SGI Altix 350 Gustavo Seabra (Wed Jan 10 2007 - 08:07:26 PST)
- AMBER: How many steps should be used for a MD calculation? Michel Becker (Tue Jan 09 2007 - 01:12:55 PST)
- AMBER: image command venditti2.unisi.it (Tue Jan 09 2007 - 06:09:07 PST)
- Re: AMBER: image command Thomas Cheatham (Tue Jan 09 2007 - 22:25:48 PST)
- Re: AMBER: image command Petr Kulhanek (Wed Jan 10 2007 - 00:45:45 PST)
- Re: AMBER: image command Thomas Cheatham (Tue Jan 09 2007 - 22:25:48 PST)
- AMBER: amber 9 Sophie Barbe (Tue Jan 09 2007 - 07:29:04 PST)
- RE: AMBER: amber 9 Ross Walker (Tue Jan 09 2007 - 08:31:36 PST)
- RE: AMBER: amber 9 Sophie Barbe (Wed Jan 10 2007 - 09:54:36 PST)
- RE: AMBER: amber 9 Ross Walker (Wed Jan 10 2007 - 10:11:44 PST)
- RE: AMBER: amber 9 Sophie Barbe (Wed Jan 10 2007 - 10:28:51 PST)
- Re: AMBER: amber 9 Chris Moth (Thu Jan 11 2007 - 11:43:27 PST)
- Re: AMBER: amber 9 David A. Case (Thu Jan 11 2007 - 11:21:09 PST)
- RE: AMBER: amber 9 Sophie Barbe (Wed Jan 10 2007 - 09:54:36 PST)
- RE: AMBER: amber 9 Ross Walker (Tue Jan 09 2007 - 08:31:36 PST)
- AMBER: explicit implicit solvent Ji-Lai Li (Wed Jan 10 2007 - 06:24:20 PST)
- Re: AMBER: explicit implicit solvent Carlos Simmerling (Wed Jan 10 2007 - 06:53:53 PST)
- AMBER: experimental phi-values as restraints rebeca.mmb.pcb.ub.es (Wed Jan 10 2007 - 08:06:11 PST)
- Re: AMBER: experimental phi-values as restraints Vladimir Tchoupakhine (Wed Jan 10 2007 - 08:23:58 PST)
- AMBER: Steve Seibold (Wed Jan 10 2007 - 08:46:28 PST)
- Re: AMBER: Vladimir Tchoupakhine (Wed Jan 10 2007 - 08:51:46 PST)
- RE: AMBER: Ross Walker (Wed Jan 10 2007 - 09:17:11 PST)
- RE: AMBER: Steve Seibold (Wed Jan 10 2007 - 11:03:30 PST)
- AMBER: Section missing from AMBER 9 manual? Steven Winfield (Wed Jan 10 2007 - 08:57:36 PST)
- Re: AMBER: Section missing from AMBER 9 manual? David A. Case (Wed Jan 10 2007 - 13:02:12 PST)
- AMBER: test submission through PBS queue Evan Kelly (Wed Jan 10 2007 - 11:20:45 PST)
- Re: AMBER: test submission through PBS queue Scott Brozell (Wed Jan 10 2007 - 11:33:09 PST)
- RE: AMBER: test submission through PBS queue Ross Walker (Wed Jan 10 2007 - 11:35:27 PST)
- AMBER: sander crashes during minimization Seth Lilavivat (Wed Jan 10 2007 - 11:29:15 PST)
- RE: AMBER: sander crashes during minimization Ross Walker (Wed Jan 10 2007 - 11:40:05 PST)
- AMBER: perturbed atoms are not bonded on using TIP5P water sugino tatsuro (Thu Jan 11 2007 - 06:12:09 PST)
- Re: AMBER: perturbed atoms are not bonded on using TIP5P water David A. Case (Thu Jan 11 2007 - 14:12:23 PST)
- RE: AMBER: perturbed atoms are not bonded on using TIP5P water sugino tatsuro (Fri Jan 12 2007 - 05:58:40 PST)
- Re: AMBER: perturbed atoms are not bonded on using TIP5P water Steven Winfield (Fri Jan 12 2007 - 06:07:38 PST)
- Re: AMBER: perturbed atoms are not bonded on using TIP5P water David A. Case (Sun Jan 14 2007 - 09:39:13 PST)
- RE: AMBER: perturbed atoms are not bonded on using TIP5P water sugino tatsuro (Fri Jan 12 2007 - 05:58:40 PST)
- Re: AMBER: perturbed atoms are not bonded on using TIP5P water sugino tatsuro (Mon Jan 15 2007 - 17:40:32 PST)
- Re: AMBER: perturbed atoms are not bonded on using TIP5P water David A. Case (Mon Jan 15 2007 - 18:23:17 PST)
- RE: AMBER: perturbed atoms are not bonded on using TIP5P water sugino tatsuro (Mon Jan 15 2007 - 19:33:18 PST)
- Re: AMBER: perturbed atoms are not bonded on using TIP5P water David A. Case (Mon Jan 15 2007 - 18:23:17 PST)
- Re: AMBER: perturbed atoms are not bonded on using TIP5P water sugino tatsuro (Mon Jan 15 2007 - 19:19:59 PST)
- RE: AMBER: perturbed atoms are not bonded on using TIP5P water sugino tatsuro (Tue Jan 16 2007 - 09:35:22 PST)
- Re: AMBER: perturbed atoms are not bonded on using TIP5P water David A. Case (Thu Jan 11 2007 - 14:12:23 PST)
- AMBER: Simulations with GB models Wei Chen (Thu Jan 11 2007 - 08:23:15 PST)
- Re: AMBER: Simulations with GB models Carlos Simmerling (Thu Jan 11 2007 - 10:28:16 PST)
- AMBER: Leap adding 3 extra atoms Akshay Patny (Thu Jan 11 2007 - 09:35:00 PST)
- AMBER: CYX residue missing from Amber 9 ff03ua (?) Chris Moth (Thu Jan 11 2007 - 11:32:04 PST)
- RE: AMBER: CYX residue missing from Amber 9 ff03ua (?) Ray Luo (Thu Jan 11 2007 - 14:59:29 PST)
- Re: AMBER: Leap adding 3 extra atoms Bill Ross (Thu Jan 11 2007 - 11:33:14 PST)
- RE: AMBER: Leap adding extra atoms Akshay Patny (Thu Jan 11 2007 - 13:38:37 PST)
- RE: AMBER: Leap adding extra atoms Scott Brozell (Mon Jan 15 2007 - 12:39:49 PST)
- RE: AMBER: Leap adding extra atoms Scott Brozell (Mon Jan 15 2007 - 13:30:00 PST)
- RE: AMBER: Leap adding extra atoms Akshay Patny (Thu Jan 11 2007 - 13:38:37 PST)
- AMBER: Amber 8.0 : how to represent EPS with VMD? Guillaume Bollot (Fri Jan 12 2007 - 06:49:28 PST)
- AMBER: solvation of protein using TIP3PBOX in amber 8 Syed Tarique Moin (Sat Jan 13 2007 - 10:25:46 PST)
- Re: AMBER: solvation of protein using TIP3PBOX in amber 8 David A. Case (Sat Jan 13 2007 - 21:40:46 PST)
- Re: AMBER: solvation of protein using TIP3PBOX in amber 8 Syed Tarique Moin (Sun Jan 14 2007 - 01:59:32 PST)
- Re: AMBER: solvation of protein using TIP3PBOX in amber 8 David A. Case (Sat Jan 13 2007 - 21:40:46 PST)
- AMBER: output khn _ (Sat Jan 13 2007 - 20:24:11 PST)
- Re: AMBER: output David A. Case (Sat Jan 13 2007 - 21:38:24 PST)
- Re: AMBER: output Thaison Tran (Sat Jan 13 2007 - 23:59:56 PST)
- AMBER: problems in energy minimization using TIP5P water model sugino tatsuro (Sun Jan 14 2007 - 08:35:11 PST)
- AMBER: problem compiling Amber 7 Kevin Cahill (Sun Jan 14 2007 - 18:35:00 PST)
- Re: AMBER: problem compiling Amber 7 Scott Brozell (Mon Jan 15 2007 - 09:29:10 PST)
- Re: AMBER: problem compiling Amber 7 David A. Case (Mon Jan 15 2007 - 09:38:26 PST)
- AMBER: About the problem of the PMEMD and cutoff $BJ}b}(B (Sun Jan 14 2007 - 19:56:17 PST)
- Re: AMBER: About the problem of the PMEMD and cutoff Robert Duke (Sun Jan 14 2007 - 20:20:22 PST)
- Re: AMBER: About the problem of the PMEMD and cutoff $BJ}b}(B (Mon Jan 15 2007 - 04:45:29 PST)
- Re: AMBER: About the problem of the PMEMD and cutoff Robert Duke (Mon Jan 15 2007 - 05:19:26 PST)
- Re: AMBER: About the problem of the PMEMD and cutoff $BJ}b}(B (Mon Jan 15 2007 - 04:45:29 PST)
- Re: AMBER: About the problem of the PMEMD and cutoff Robert Duke (Sun Jan 14 2007 - 20:20:22 PST)
- Fwd: Re: AMBER: solvation of protein using TIP3PBOX in amber 8 Syed Tarique Moin (Mon Jan 15 2007 - 21:14:12 PST)
- AMBER: convert pdb files to restart files khn _ (Tue Jan 16 2007 - 02:50:47 PST)
- Re: AMBER: convert pdb files to restart files Stefano Pieraccini (Tue Jan 16 2007 - 04:57:41 PST)
- RE: AMBER: convert pdb files to restart files Ross Walker (Tue Jan 16 2007 - 07:19:54 PST)
- AMBER: mm_pbsa_statistics.pl Antonio Morreale (Tue Jan 16 2007 - 04:28:52 PST)
- AMBER: RE: help Ross Walker (Tue Jan 16 2007 - 08:23:44 PST)
- AMBER: Radii for water hydrogens are different Steve Spronk (Tue Jan 16 2007 - 12:29:45 PST)
- Re: AMBER: Radii for water hydrogens are different David A. Case (Fri Jan 19 2007 - 10:13:41 PST)
- AMBER: RESP charges for charged species Michel Becker (Tue Jan 16 2007 - 13:44:26 PST)
- Re: AMBER: RESP charges for charged species FyD (Tue Jan 16 2007 - 21:13:51 PST)
- AMBER: How are water molecules at cutoff being treated? Li Su (Tue Jan 16 2007 - 14:48:47 PST)
- Re: AMBER: How are water molecules at cutoff being treated? David A. Case (Tue Jan 16 2007 - 15:36:07 PST)
- AMBER: mm_pbsa vertex atom mismatch AYTUG TUNCEL (Tue Jan 16 2007 - 15:10:35 PST)
- AMBER: calcium parameter for GB Wei Chen (Tue Jan 16 2007 - 15:21:08 PST)
- Re: AMBER: calcium parameter for GB David A. Case (Tue Jan 16 2007 - 15:33:43 PST)
- Re: AMBER: calcium parameter for GB Ji-Lai Li (Wed Jan 17 2007 - 00:19:09 PST)
- Re: AMBER: calcium parameter for GB Wei Chen (Wed Jan 17 2007 - 08:25:47 PST)
- Re: AMBER: calcium parameter for GB Ji-Lai Li (Wed Jan 17 2007 - 00:19:09 PST)
- Re: AMBER: calcium parameter for GB Qing Zhang (Wed Jan 17 2007 - 09:06:36 PST)
- Re: AMBER: calcium parameter for GB Ji-Lai Li (Wed Jan 17 2007 - 17:25:20 PST)
- Re: AMBER: calcium parameter for GB Wei Chen (Thu Jan 18 2007 - 08:15:45 PST)
- Re: AMBER: calcium parameter for GB Ji-Lai Li (Wed Jan 17 2007 - 17:25:20 PST)
- Re: AMBER: calcium parameter for GB Bill Ross (Thu Jan 18 2007 - 10:36:01 PST)
- Re: AMBER: calcium parameter for GB Qing Zhang (Tue Jan 23 2007 - 10:49:54 PST)
- Re: AMBER: calcium parameter for GB Ji-Lai Li (Tue Jan 23 2007 - 18:07:21 PST)
- Re: AMBER: calcium parameter for GB Qing Zhang (Wed Jan 24 2007 - 09:33:24 PST)
- Re: AMBER: calcium parameter for GB David A. Case (Tue Jan 16 2007 - 15:33:43 PST)
- AMBER: DNA structure analysis Catein Catherine (Tue Jan 16 2007 - 19:12:42 PST)
- Re: AMBER: DNA structure analysis Jiri Sponer (Wed Jan 17 2007 - 02:39:36 PST)
- Re: AMBER: DNA structure analysis Catein Catherine (Wed Jan 17 2007 - 08:23:08 PST)
- Re: AMBER: DNA structure analysis Fenghui Fan (Wed Jan 17 2007 - 07:31:00 PST)
- Re: AMBER: DNA structure analysis Catein Catherine (Wed Jan 17 2007 - 08:24:16 PST)
- Re: AMBER: DNA structure analysis Jiri Sponer (Wed Jan 17 2007 - 02:39:36 PST)
- RE: AMBER: perturbed atoms are not bonded on using TIP5P wate sugino tatsuro (Tue Jan 16 2007 - 21:47:51 PST)
- Re: AMBER: perturbed atoms are not bonded on using TIP5P wate David A. Case (Thu Jan 18 2007 - 09:40:37 PST)
- AMBER: Drug bound to the protein Sophie Barbe (Wed Jan 17 2007 - 00:56:21 PST)
- Re: AMBER: Drug bound to the protein Guillermo Mulliert Carlín (Wed Jan 17 2007 - 07:27:45 PST)
- Re: AMBER: Drug bound to the protein David A. Case (Wed Jan 17 2007 - 08:57:02 PST)
- AMBER: solaris 10 and compilers on X86_64 hardware M. L. Dodson (Wed Jan 17 2007 - 07:45:27 PST)
- Re: AMBER: solaris 10 and compilers on X86_64 hardware Knut Langsetmo (Wed Jan 17 2007 - 08:03:33 PST)
- AMBER: vdW parameters for chlorine atom Austin B. Yongye (Wed Jan 17 2007 - 09:19:34 PST)
- Re: AMBER: vdW parameters for chlorine atom David A. Case (Wed Jan 17 2007 - 17:55:15 PST)
- AMBER: (no subject) Yusheng Dou (Wed Jan 17 2007 - 09:29:10 PST)
- Re: AMBER: Drug bound to the protein Bill Ross (Wed Jan 17 2007 - 11:28:15 PST)
- AMBER: vertex atom mismatch saurabh agrawal (Wed Jan 17 2007 - 23:49:25 PST)
- AMBER: WARNING: Missing VDWNB for MM in 1 -> Taken from 0 saurabh agrawal (Thu Jan 18 2007 - 09:15:40 PST)
- AMBER: (no subject) mahdi fathi (Thu Jan 18 2007 - 02:10:24 PST)
- AMBER: sanger deepti nayar (Thu Jan 18 2007 - 03:29:19 PST)
- Re: AMBER: sanger Chupakhin Vladimir (Thu Jan 18 2007 - 06:05:01 PST)
- Re: AMBER: sanger Carlos Simmerling (Thu Jan 18 2007 - 06:09:31 PST)
- Re: AMBER: sanger David A. Case (Thu Jan 18 2007 - 09:05:34 PST)
- Re: AMBER: sanger Chupakhin Vladimir (Thu Jan 18 2007 - 06:05:01 PST)
- AMBER: issues with restrt file Amit Kumar (Thu Jan 18 2007 - 08:15:52 PST)
- Re: AMBER: issues with restrt file Carlos Simmerling (Thu Jan 18 2007 - 09:07:35 PST)
- Re: AMBER: issues with restrt file Amit Kumar (Thu Jan 18 2007 - 09:59:40 PST)
- Re: AMBER: issues with restrt file Carlos Simmerling (Thu Jan 18 2007 - 10:02:48 PST)
- Re: AMBER: issues with restrt file Amit Kumar (Thu Jan 18 2007 - 10:27:12 PST)
- Re: AMBER: issues with restrt file Carlos Simmerling (Thu Jan 18 2007 - 10:30:01 PST)
- Re: AMBER: issues with restrt file Amit Kumar (Thu Jan 18 2007 - 09:59:40 PST)
- Re: AMBER: issues with restrt file Carlos Simmerling (Thu Jan 18 2007 - 09:07:35 PST)
- AMBER: error when using sander.LES: exceeded MAXLES Kailee (Thu Jan 18 2007 - 08:33:18 PST)
- Re: AMBER: error when using sander.LES: exceeded MAXLES Carlos Simmerling (Thu Jan 18 2007 - 09:03:08 PST)
- Re: AMBER: error when using sander.LES: exceeded MAXLES David A. Case (Thu Jan 18 2007 - 09:12:23 PST)
- AMBER: mm-pbsa, long distance free energy calculation problem Bing Liu (Thu Jan 18 2007 - 09:06:53 PST)
- Re: AMBER: mm-pbsa, long distance free energy calculation problem Wei Chen (Thu Jan 18 2007 - 12:24:26 PST)
- Re: AMBER: mm-pbsa, long distance free energy calculation problem Bing Liu (Thu Jan 18 2007 - 13:09:38 PST)
- Re: AMBER: mm-pbsa, long distance free energy calculation problem Wei Chen (Thu Jan 18 2007 - 12:24:26 PST)
- AMBER: HF/6-31G* ESP Charges do not match with ff02 charges Pavan G (Thu Jan 18 2007 - 22:19:19 PST)
- Re: AMBER: HF/6-31G* ESP Charges do not match with ff02 charges mernst.tricity.wsu.edu (Thu Jan 18 2007 - 23:02:10 PST)
- Re: AMBER: HF/6-31G* ESP Charges do not match with ff02 charges FyD (Fri Jan 19 2007 - 00:31:46 PST)
- Re: AMBER: HF/6-31G* ESP Charges do not match with ff02 charges mernst.tricity.wsu.edu (Fri Jan 19 2007 - 10:59:52 PST)
- Re: AMBER: HF/6-31G* ESP Charges do not match with ff02 charges FyD (Fri Jan 19 2007 - 12:30:43 PST)
- Re: AMBER: HF/6-31G* ESP Charges do not match with ff02 charges Pavan G (Sun Jan 28 2007 - 07:45:32 PST)
- Re: AMBER: HF/6-31G* ESP Charges do not match with ff02 charges mernst.tricity.wsu.edu (Thu Jan 18 2007 - 23:02:10 PST)
- AMBER: RESP Charges for Charged Carboxylate in Organic Ligand Akshay Patny (Fri Jan 19 2007 - 00:34:58 PST)
- Re: AMBER: RESP Charges for Charged Carboxylate in Organic Ligand FyD (Fri Jan 19 2007 - 05:19:17 PST)
- AMBER: Dihedral FF parameters FyD (Fri Jan 19 2007 - 07:40:10 PST)
- Re: AMBER: Dihedral FF parameters Ye Mei (Fri Jan 19 2007 - 07:44:14 PST)
- AMBER: Dihedral FF parameters FyD (Fri Jan 19 2007 - 07:40:10 PST)
- RE: AMBER: RESP Charges for Charged Carboxylate in Organic Ligand Akshay Patny (Mon Jan 29 2007 - 08:57:45 PST)
- Re: AMBER: RESP Charges for Charged Carboxylate in Organic Ligand FyD (Fri Jan 19 2007 - 05:19:17 PST)
- AMBER: The convergence criteria for the energy minimization of the DNA molecule (dodecmer duplux) Chengwen Chen (Fri Jan 19 2007 - 01:37:53 PST)
- Re: AMBER: The convergence criteria for the energy minimization of the DNA molecule (dodecmer duplux) David A. Case (Fri Jan 19 2007 - 08:36:34 PST)
- Re: AMBER: The convergence criteria for the energy minimization of the DNA molecule (dodecmer duplux) Chengwen Chen (Sat Jan 20 2007 - 19:55:46 PST)
- Re: AMBER: The convergence criteria for the energy minimization of the DNA molecule (dodecmer duplux) David A. Case (Fri Jan 19 2007 - 08:36:34 PST)
- AMBER: PB Bomb in pb_aaradi(): No radius assigned for atom 4474 F3 f emilia wu (Fri Jan 19 2007 - 05:15:56 PST)
- RE: AMBER: PB Bomb in pb_aaradi(): No radius assigned for atom 4474 F3 f Ray Luo (Fri Jan 19 2007 - 09:50:19 PST)
- Re: RE: AMBER: PB Bomb in pb_aaradi(): No radius assigned for atom 4474 F3 f emilia wu (Fri Jan 19 2007 - 17:54:27 PST)
- RE: RE: AMBER: PB Bomb in pb_aaradi(): No radius assigned for atom 4474 F3 f Ray Luo (Sat Jan 20 2007 - 10:45:36 PST)
- Re: RE: RE: AMBER: PB Bomb in pb_aaradi(): No radius assigned for atom 4474 F3 f emilia wu (Sun Jan 21 2007 - 17:42:18 PST)
- Re: RE: RE: AMBER: PB Bomb in pb_aaradi(): No radius assigned for atom 4474 F3 f emilia wu (Mon Jan 22 2007 - 16:22:39 PST)
- RE: RE: RE: AMBER: PB Bomb in pb_aaradi(): No radius assigned for atom 4474 F3 f Ray Luo (Mon Jan 22 2007 - 18:35:06 PST)
- Re: RE: RE: RE: AMBER: PB Bomb in pb_aaradi(): No radius assigned for atom 4474 F3 f emilia wu (Mon Jan 22 2007 - 18:45:46 PST)
- RE: AMBER: PB Bomb in pb_aaradi(): No radius assigned for atom 4474 F3 f Ray Luo (Tue Jan 23 2007 - 10:43:23 PST)
- Re: AMBER: PB Bomb in pb_aaradi(): No radius assigned for atom 4474 F3 f David A. Case (Wed Jan 24 2007 - 07:14:24 PST)
- Re: RE: AMBER: PB Bomb in pb_aaradi(): No radius assigned for atom 4474 F3 f emilia wu (Fri Jan 19 2007 - 17:54:27 PST)
- RE: AMBER: PB Bomb in pb_aaradi(): No radius assigned for atom 4474 F3 f Ray Luo (Fri Jan 19 2007 - 09:50:19 PST)
- AMBER: (no subject) Yusheng Dou (Fri Jan 19 2007 - 06:51:51 PST)
- AMBER: Steve Seibold (Fri Jan 19 2007 - 11:53:47 PST)
- RE: AMBER: Ross Walker (Fri Jan 19 2007 - 12:47:24 PST)
- AMBER: equilibration with amber5, production of MD with amber7 Carlos Javier Nuñez Aguero (Fri Jan 19 2007 - 12:47:05 PST)
- Re: AMBER: equilibration with amber5, production of MD with amber7 David A. Case (Sun Jan 21 2007 - 21:28:46 PST)
- AMBER: a question about analysis of DNA duplex after MD simulation with curves wendy chen (Sat Jan 20 2007 - 19:28:19 PST)
- AMBER: deformation of DNA duplex after MD simulation (AMBER9) Chengwen Chen (Sat Jan 20 2007 - 20:28:59 PST)
- AMBER: Can't run Normal Mode Analysis !!! jitrayut jitonnom (Sun Jan 21 2007 - 21:09:48 PST)
- Fwd: AMBER: Can't run Normal Mode Analysis !!! jitrayut jitonnom (Mon Jan 22 2007 - 04:58:24 PST)
- Re: AMBER: Can't run Normal Mode Analysis !!! Scott Pendley (Mon Jan 22 2007 - 09:05:26 PST)
- AMBER: MM-PBSA problem: Why jitrayut jitonnom (Sun Jan 21 2007 - 21:20:38 PST)
- Re: AMBER: MM-PBSA problem: Why vanessa wai (Mon Jan 22 2007 - 02:47:30 PST)
- AMBER: Can't run decompose energy in MM-PBSA jitrayut jitonnom (Mon Jan 22 2007 - 06:20:51 PST)
- RE: AMBER: Can't run decompose energy in MM-PBSA Ray Luo (Mon Jan 22 2007 - 09:27:03 PST)
- Re: AMBER: Can't run decompose energy in MM-PBSA vanessa wai (Mon Jan 22 2007 - 17:37:02 PST)
- RE: AMBER: Can't run decompose energy in MM-PBSA Ray Luo (Mon Jan 22 2007 - 09:27:03 PST)
- AMBER: problem with distance restraints Ed Pate (Mon Jan 22 2007 - 11:43:58 PST)
- Re: AMBER: problem with distance restraints David A. Case (Mon Jan 22 2007 - 12:10:12 PST)
- Re: AMBER: problem with distance restraints Ed Pate (Mon Jan 22 2007 - 14:29:15 PST)
- Re: AMBER: problem with distance restraints David A. Case (Mon Jan 22 2007 - 15:41:50 PST)
- Re: AMBER: problem with distance restraints Ed Pate (Mon Jan 22 2007 - 14:29:15 PST)
- Re: AMBER: problem with distance restraints David A. Case (Mon Jan 22 2007 - 12:10:12 PST)
- AMBER: united atom parameters for -NH2 and -OH groups emine cebe (Mon Jan 22 2007 - 11:47:12 PST)
- AMBER: how much restraint ? AYTUG TUNCEL (Mon Jan 22 2007 - 14:09:12 PST)
- AMBER: ADDIONS do not neutralize to ZERO Akshay Patny (Mon Jan 22 2007 - 17:19:20 PST)
- RE: AMBER: ADDIONS do not neutralize to ZERO Akshay Patny (Mon Jan 22 2007 - 18:10:47 PST)
- RE: AMBER: ADDIONS do not neutralize to ZERO Bill Ross (Tue Jan 23 2007 - 09:30:06 PST)
- RE: AMBER: ADDIONS do not neutralize to ZERO Akshay Patny (Fri Jan 26 2007 - 15:38:48 PST)
- RE: AMBER: ADDIONS do not neutralize to ZERO Ross Walker (Sun Jan 28 2007 - 20:38:25 PST)
- RE: AMBER: ADDIONS do not neutralize to ZERO Akshay Patny (Mon Jan 29 2007 - 09:04:58 PST)
- Re: AMBER: ADDIONS do not neutralize to ZERO Chris Moth (Mon Jan 29 2007 - 13:30:20 PST)
- RE: AMBER: ADDIONS do not neutralize to ZERO Ross Walker (Sun Jan 28 2007 - 20:38:25 PST)
- RE: AMBER: ADDIONS do not neutralize to ZERO Bill Ross (Sun Jan 28 2007 - 12:41:43 PST)
- RE: AMBER: ADDIONS do not neutralize to ZERO saurabh agrawal (Sun Jan 28 2007 - 20:07:37 PST)
- Re: AMBER: ADDIONS do not neutralize to ZERO Bill Ross (Mon Jan 22 2007 - 17:58:11 PST)
- AMBER: Defining BOX INFO during TLEAP Akshay Patny (Mon Jan 22 2007 - 19:02:15 PST)
- Re: AMBER: Defining BOX INFO during TLEAP David A. Case (Wed Jan 24 2007 - 07:04:24 PST)
- RE: AMBER: Defining BOX INFO during TLEAP Akshay Patny (Wed Jan 24 2007 - 11:54:37 PST)
- RE: AMBER: Defining BOX INFO during TLEAP Ross Walker (Wed Jan 24 2007 - 12:09:30 PST)
- AMBER: Antechamber esp calculation mathew k varghese (Mon Jan 22 2007 - 20:44:42 PST)
- Re: AMBER: Antechamber esp calculation Ilyas Yildirim (Mon Jan 22 2007 - 22:07:31 PST)
- Re: AMBER: Antechamber esp calculation FyD (Mon Jan 22 2007 - 22:05:46 PST)
- AMBER: pmemd install error Ji-Lai Li (Mon Jan 22 2007 - 22:59:27 PST)
- AMBER: Re: pmemd install error Ji-Lai Li (Mon Jan 22 2007 - 23:03:33 PST)
- Re: AMBER: pmemd install error Robert Duke (Tue Jan 23 2007 - 05:01:46 PST)
- Re: AMBER: pmemd install error David A. Case (Fri Jan 26 2007 - 15:45:14 PST)
- Re: AMBER: pmemd install error Ji-Lai Li (Sun Jan 28 2007 - 19:18:05 PST)
- Re: AMBER: pmemd install error Robert Duke (Tue Jan 30 2007 - 12:24:19 PST)
- Re: AMBER: pmemd install error David A. Case (Fri Jan 26 2007 - 15:45:14 PST)
- AMBER: nuc.in file deepti nayar (Tue Jan 23 2007 - 00:21:27 PST)
- Re: AMBER: nuc.in file David A. Case (Thu Jan 25 2007 - 11:59:12 PST)
- AMBER: Fatal error: Command failed for target `test.sander.no_lmod' Muhammad Naim Mohmad Rouyan (Tue Jan 23 2007 - 01:50:58 PST)
- Re: AMBER: Fatal error: Command failed for target `test.sander.no_lmod' Gustavo Seabra (Tue Jan 23 2007 - 08:54:09 PST)
- AMBER: Problem with installation of the leap module of AMBER9 on Linux Suse 10.2 Cenk Andac (Tue Jan 23 2007 - 04:03:37 PST)
- Re: AMBER: Problem with installation of the leap module of AMBER9 on Linux Suse 10.2 Steven Winfield (Tue Jan 23 2007 - 04:11:12 PST)
- Re: AMBER: Problem with installation of the leap module of AMBER9 on Linux Suse 10.2 David A. Case (Wed Jan 24 2007 - 07:09:36 PST)
- RE: AMBER: Problem with installation of the leap module of AMBER9 on Linux Suse 10.2 Ross Walker (Wed Jan 24 2007 - 09:49:20 PST)
- AMBER: Molecular dynamic issues Sophie Barbe (Tue Jan 23 2007 - 06:34:50 PST)
- Re: AMBER: Molecular dynamic issues Chupakhin Vladimir (Tue Jan 23 2007 - 06:50:56 PST)
- Re: AMBER: Molecular dynamic issues Carlos Simmerling (Tue Jan 23 2007 - 06:54:24 PST)
- Re: AMBER: Molecular dynamic issues Sophie Barbe (Wed Jan 24 2007 - 06:41:19 PST)
- Re: AMBER: Molecular dynamic issues Carlos Simmerling (Tue Jan 23 2007 - 06:54:24 PST)
- Re: AMBER: Molecular dynamic issues Chupakhin Vladimir (Tue Jan 23 2007 - 06:50:56 PST)
- AMBER: coordinates ****** kepa koldo burusco (Tue Jan 23 2007 - 08:19:54 PST)
- Re: AMBER: coordinates ****** David A. Case (Thu Jan 25 2007 - 12:08:52 PST)
- AMBER: about coordinates ****** and diffusion kepa koldo burusco (Sun Jan 28 2007 - 09:15:57 PST)
- RE: AMBER: about coordinates ****** and diffusion Ross Walker (Sun Jan 28 2007 - 09:28:30 PST)
- Re: AMBER: about coordinates ****** and diffusion Thomas Cheatham (Sun Jan 28 2007 - 13:09:00 PST)
- AMBER: about coordinates ****** and diffusion kepa koldo burusco (Sun Jan 28 2007 - 09:15:57 PST)
- Re: AMBER: coordinates ****** David A. Case (Thu Jan 25 2007 - 12:08:52 PST)
- Re: AMBER: nuc.in file Bill Ross (Tue Jan 23 2007 - 09:42:44 PST)
- AMBER: dihedral angle by Ptraj Esther Brugger (Tue Jan 23 2007 - 10:24:42 PST)
- Re: AMBER: dihedral angle by Ptraj Thomas Cheatham III (Tue Jan 23 2007 - 10:41:22 PST)
- Re: AMBER: dihedral angle by Ptraj Esther Brugger (Tue Jan 23 2007 - 15:02:00 PST)
- Re: AMBER: dihedral angle by Ptraj Thomas Cheatham (Tue Jan 23 2007 - 19:57:47 PST)
- Re: AMBER: dihedral angle by Ptraj Esther Brugger (Wed Jan 24 2007 - 08:02:38 PST)
- Re: AMBER: dihedral angle by Ptraj Esther Brugger (Wed Jan 24 2007 - 09:08:15 PST)
- Re: AMBER: dihedral angle by Ptraj Esther Brugger (Tue Jan 23 2007 - 15:02:00 PST)
- Re: AMBER: dihedral angle by Ptraj Thomas Cheatham III (Tue Jan 23 2007 - 10:41:22 PST)
- Re: AMBER: coordinates ****** Bill Ross (Tue Jan 23 2007 - 13:20:10 PST)
- AMBER: Does amber use water density around 1 at room temperature Li Su (Tue Jan 23 2007 - 14:07:20 PST)
- RE: AMBER: Does amber use water density around 1 at room temperature Ross Walker (Tue Jan 23 2007 - 15:11:41 PST)
- Re: AMBER: Does amber use water density around 1 at room temperature Li Su (Wed Jan 24 2007 - 14:44:40 PST)
- Re: AMBER: Does amber use water density around 1 at room temperature Thomas Steinbrecher (Wed Jan 24 2007 - 15:26:50 PST)
- AMBER: mm_pbsa error Syed Tarique Moin (Wed Jan 24 2007 - 23:15:29 PST)
- Re: AMBER: mm_pbsa error vanessa wai (Wed Jan 24 2007 - 23:24:43 PST)
- Re: AMBER: mm_pbsa error Syed Tarique Moin (Thu Jan 25 2007 - 02:04:36 PST)
- Re: AMBER: mm_pbsa error Varsha Goyal (Thu Jan 25 2007 - 08:16:31 PST)
- Re: AMBER: mm_pbsa error vanessa wai (Thu Jan 25 2007 - 18:13:19 PST)
- Re: AMBER: mm_pbsa error Syed Tarique Moin (Thu Jan 25 2007 - 22:04:22 PST)
- Re: AMBER: mm_pbsa error vanessa wai (Sat Jan 27 2007 - 07:02:33 PST)
- AMBER: mm_pbsa Array reference error Syed Tarique Moin (Thu Jan 25 2007 - 22:21:07 PST)
- Re: AMBER: Does amber use water density around 1 at room temperature Li Su (Wed Jan 24 2007 - 14:44:40 PST)
- RE: AMBER: Does amber use water density around 1 at room temperature Ross Walker (Tue Jan 23 2007 - 15:11:41 PST)
- AMBER: Fatal error: Command failed for target `test.sander.no_lmod' Muhammad Naim Mohmad Rouyan (Tue Jan 23 2007 - 17:26:45 PST)
- AMBER: minimization using fcap Syed Tarique Moin (Wed Jan 24 2007 - 01:08:40 PST)
- Re: AMBER: minimization using fcap David A. Case (Wed Jan 24 2007 - 07:05:20 PST)
- AMBER: MM-PSBA decoupling Sergey Samsonov (Wed Jan 24 2007 - 05:03:24 PST)
- AMBER: Unable to compile amber9 Vinh To (Wed Jan 24 2007 - 06:41:06 PST)
- RE: AMBER: Unable to compile amber9 Ross Walker (Wed Jan 24 2007 - 07:48:41 PST)
- AMBER: (no subject) Sophie Barbe (Wed Jan 24 2007 - 09:26:20 PST)
- AMBER: organic solvent : hexan octan Sophie Barbe (Wed Jan 24 2007 - 09:38:50 PST)
- Re: AMBER: organic solvent : hexan octan Cenk Andac (Wed Jan 24 2007 - 10:18:19 PST)
- Re: AMBER: organic solvent : hexan octan Sophie Barbe (Wed Jan 24 2007 - 10:28:38 PST)
- Re: AMBER: organic solvent : hexan octan Gustavo Seabra (Wed Jan 24 2007 - 11:12:40 PST)
- Re: AMBER: organic solvent : hexan octan Cenk Andac (Wed Jan 24 2007 - 11:37:12 PST)
- Re: AMBER: organic solvent : hexan octan Sophie Barbe (Wed Jan 24 2007 - 10:28:38 PST)
- Re: AMBER: organic solvent : hexan octan FyD (Wed Jan 24 2007 - 20:50:33 PST)
- Re: AMBER: organic solvent : hexan octan Cenk Andac (Wed Jan 24 2007 - 10:18:19 PST)
- AMBER: RE: a request Ross Walker (Wed Jan 24 2007 - 09:57:32 PST)
- AMBER: LJ potential Steve Seibold (Wed Jan 24 2007 - 11:44:58 PST)
- Re: AMBER: LJ potential David A. Case (Sat Jan 27 2007 - 10:03:15 PST)
- AMBER: evaluate expression Ji-Lai Li (Wed Jan 24 2007 - 20:14:11 PST)
- AMBER: Drug Leads interaction with ds and Triplex DNA puneet kacker (Wed Jan 24 2007 - 21:28:41 PST)
- AMBER: Fwd: a request santanu roy (Thu Jan 25 2007 - 00:55:32 PST)
- Re: AMBER: Fwd: a request Gustavo Seabra (Thu Jan 25 2007 - 04:44:58 PST)
- Re: AMBER: Fwd: a request santanu roy (Thu Jan 25 2007 - 05:15:08 PST)
- Re: AMBER: Fwd: a request Gustavo Seabra (Thu Jan 25 2007 - 07:49:49 PST)
- Re: AMBER: Fwd: a request santanu roy (Fri Jan 26 2007 - 22:34:15 PST)
- Re: AMBER: Fwd: a request Gustavo Seabra (Sat Jan 27 2007 - 20:52:08 PST)
- Re: AMBER: Fwd: a request santanu roy (Sun Jan 28 2007 - 22:43:53 PST)
- Re: AMBER: Fwd: a request Gustavo Seabra (Mon Jan 29 2007 - 09:24:12 PST)
- Re: AMBER: Fwd: a request santanu roy (Tue Jan 30 2007 - 02:04:46 PST)
- Re: AMBER: Fwd: a request Gustavo Seabra (Tue Jan 30 2007 - 07:53:33 PST)
- AMBER: Including Relevant Subject Lines Ross Walker (Tue Jan 30 2007 - 08:43:59 PST)
- Re: AMBER: Fwd: a request santanu roy (Thu Jan 25 2007 - 05:15:08 PST)
- Re: AMBER: Fwd: a request Gustavo Seabra (Thu Jan 25 2007 - 04:44:58 PST)
- AMBER: error when compiling Moilview Kailee (Thu Jan 25 2007 - 03:31:24 PST)
- Re: AMBER: error when compiling Moilview Carlos Simmerling (Thu Jan 25 2007 - 04:24:53 PST)
- Re: AMBER: error when compiling Moilview Kailee (Thu Jan 25 2007 - 05:03:07 PST)
- Re: AMBER: error when compiling Moilview Gustavo Seabra (Thu Jan 25 2007 - 07:50:57 PST)
- Re: AMBER: error when compiling Moilview Kailee (Thu Jan 25 2007 - 08:12:09 PST)
- Re: AMBER: error when compiling Moilview Carlos Simmerling (Thu Jan 25 2007 - 09:34:26 PST)
- Re: AMBER: error when compiling Moilview Kailee (Thu Jan 25 2007 - 05:03:07 PST)
- Re: AMBER: error when compiling Moilview Carlos Simmerling (Thu Jan 25 2007 - 04:24:53 PST)
- AMBER: Gas-phase energies (and more) Jason K (Thu Jan 25 2007 - 15:04:16 PST)
- RE: AMBER: Gas-phase energies (and more) Yong Duan (Thu Jan 25 2007 - 15:58:48 PST)
- Re: AMBER: Gas-phase energies (and more) Jason K (Fri Jan 26 2007 - 13:36:25 PST)
- Re: AMBER: Gas-phase energies (and more) Carlos Simmerling (Sun Jan 28 2007 - 10:48:13 PST)
- Re: AMBER: Gas-phase energies (and more) David A. Case (Sun Jan 28 2007 - 18:23:29 PST)
- RE: AMBER: Gas-phase energies (and more) Yong Duan (Sun Jan 28 2007 - 19:43:56 PST)
- Re: AMBER: Gas-phase energies (and more) Jason K (Fri Jan 26 2007 - 13:36:25 PST)
- RE: AMBER: Gas-phase energies (and more) Yong Duan (Tue Jan 30 2007 - 12:32:39 PST)
- RE: AMBER: Gas-phase energies (and more) Yong Duan (Thu Jan 25 2007 - 15:58:48 PST)
- Re: AMBER: amber9 parralel compiling Seaclear Theory (Thu Jan 25 2007 - 18:15:05 PST)
- Re: AMBER: amber9 parralel compiling Seaclear Theory (Fri Jan 26 2007 - 10:55:43 PST)
- Re: AMBER: amber9 parralel compiling David A. Case (Fri Jan 26 2007 - 15:45:25 PST)
- Re: AMBER: amber9 parralel compiling Seaclear Theory (Sat Jan 27 2007 - 10:59:23 PST)
- Re: AMBER: amber9 parralel compiling David A. Case (Sat Jan 27 2007 - 11:28:27 PST)
- Re: AMBER: amber9 parralel compiling Seaclear Theory (Sat Jan 27 2007 - 15:16:19 PST)
- Re: AMBER: amber9 parralel compiling Seaclear Theory (Sat Jan 27 2007 - 10:59:23 PST)
- AMBER: sander bug? Nursultan Bogatov (Thu Jan 25 2007 - 18:28:53 PST)
- RE: AMBER: sander bug? Ross Walker (Thu Jan 25 2007 - 23:26:55 PST)
- AMBER: another sander bug? Nursultan Bogatov (Thu Jan 25 2007 - 22:43:13 PST)
- RE: AMBER: another sander bug? Ross Walker (Thu Jan 25 2007 - 23:50:39 PST)
- AMBER: improper dihedral lishan yao (Fri Jan 26 2007 - 06:42:15 PST)
- Re: AMBER: improper dihedral David A. Case (Fri Jan 26 2007 - 08:09:55 PST)
- AMBER: improper dihedral lishan yao (Fri Jan 26 2007 - 06:42:15 PST)
- RE: AMBER: another sander bug? Ross Walker (Thu Jan 25 2007 - 23:50:39 PST)
- AMBER: Regarding energy of decomposition tutorials zachary hartman (Fri Jan 26 2007 - 07:29:50 PST)
- Fwd: AMBER: mm_pbsa Array reference error Syed Tarique Moin (Fri Jan 26 2007 - 10:54:56 PST)
- AMBER: amber parallel compile error with g95 Seaclear Theory (Fri Jan 26 2007 - 11:00:52 PST)
- AMBER: radius of gyration Esther Brugger (Fri Jan 26 2007 - 12:17:37 PST)
- AMBER: Is there a pmemd machine file for OSX Intel Kevin Kelliher (Fri Jan 26 2007 - 13:50:29 PST)
- AMBER: NVT/NPT equilibration issue in GPCR-membrane simulation Akshay Patny (Fri Jan 26 2007 - 14:23:46 PST)
- RE: AMBER: NVT/NPT equilibration issue in GPCR-membrane simulation Ross Walker (Fri Jan 26 2007 - 15:11:06 PST)
- Re: AMBER: NVT/NPT equilibration issue in GPCR-membrane simulation David A. Case (Fri Jan 26 2007 - 17:45:51 PST)
- RE: AMBER: NVT/NPT equilibration issue in GPCR-membrane simulation Akshay Patny (Fri Jan 26 2007 - 15:27:56 PST)
- RE: AMBER: NVT/NPT equilibration issue in GPCR-membrane simulation Ross Walker (Fri Jan 26 2007 - 15:11:06 PST)
- AMBER: Ligand-Protein Distance Restraints during MD Simulation Akshay Patny (Fri Jan 26 2007 - 16:06:26 PST)
- Re: AMBER: Ligand-Protein Distance Restraints during MD Simulation David Mobley (Tue Jan 30 2007 - 09:16:19 PST)
- AMBER: mm_pbsa Array reference error Syed Tarique Moin (Sat Jan 27 2007 - 00:02:16 PST)
- Re: AMBER: mm_pbsa Array reference error Scott Pendley (Wed Jan 31 2007 - 09:48:36 PST)
- Re: AMBER: mm_pbsa Array reference error Syed Tarique Moin (Wed Jan 31 2007 - 21:19:48 PST)
- Re: AMBER: mm_pbsa Array reference error Scott Pendley (Wed Jan 31 2007 - 09:48:36 PST)
- AMBER: yet another SANDER bug? Miyeegombo Enkhbold (Sat Jan 27 2007 - 19:11:22 PST)
- RE: AMBER: yet another SANDER bug? Ross Walker (Sat Jan 27 2007 - 20:18:24 PST)
- AMBER: Improper angle by Antechamber Pavan G (Sun Jan 28 2007 - 09:28:29 PST)
- Re: AMBER: Improper angle by Antechamber David A. Case (Sun Jan 28 2007 - 18:20:26 PST)
- Re: AMBER: radius of gyration Bill Ross (Sun Jan 28 2007 - 12:01:05 PST)
- Re: AMBER: radius of gyration Esther Brugger (Mon Jan 29 2007 - 07:51:26 PST)
- Re: AMBER: radius of gyration Bill Ross (Mon Jan 29 2007 - 11:51:39 PST)
- Re: AMBER: radius of gyration Esther Brugger (Mon Jan 29 2007 - 13:06:00 PST)
- Re: AMBER: radius of gyration Thomas Cheatham III (Mon Jan 29 2007 - 13:21:20 PST)
- Re: AMBER: radius of gyration Esther Brugger (Mon Jan 29 2007 - 14:27:34 PST)
- Re: AMBER: radius of gyration Esther Brugger (Mon Jan 29 2007 - 13:06:00 PST)
- AMBER: Why there is a gap or jump if continue ntt=3 or ntt=1 Jiapu.Zhang.csiro.au (Sun Jan 28 2007 - 22:04:34 PST)
- RE: AMBER: Why there is a gap or jump if continue ntt=3 or ntt=1 Ross Walker (Sun Jan 28 2007 - 22:16:32 PST)
- RE: AMBER: Why there is a gap or jump if continue ntt=3 or ntt=1 Jiapu.Zhang.csiro.au (Mon Jan 29 2007 - 14:08:26 PST)
- AMBER: gaussian output to prepin problem Rima Chaudhuri (Mon Jan 29 2007 - 09:14:31 PST)
- RE: AMBER: gaussian output to prepin problem Junmei Wang (Mon Jan 29 2007 - 18:43:56 PST)
- AMBER: Antechamber Charge Calculation Method A Box (Mon Jan 29 2007 - 16:46:42 PST)
- RE: AMBER: Antechamber Charge Calculation Method Junmei Wang (Mon Jan 29 2007 - 18:48:17 PST)
- AMBER: MM-PBSA doubt mathew k varghese (Mon Jan 29 2007 - 18:12:44 PST)
- RE: AMBER: MM-PBSA doubt Ray Luo (Mon Jan 29 2007 - 20:04:52 PST)
- RE: AMBER: MM-PBSA doubt mathew k varghese (Mon Jan 29 2007 - 20:22:50 PST)
- RE: AMBER: MM-PBSA doubt Ray Luo (Mon Jan 29 2007 - 21:29:01 PST)
- RE: AMBER: MM-PBSA doubt mathew k varghese (Mon Jan 29 2007 - 20:22:50 PST)
- RE: AMBER: MM-PBSA doubt Ray Luo (Mon Jan 29 2007 - 20:04:52 PST)
- AMBER: xleap deepti nayar (Tue Jan 30 2007 - 02:40:10 PST)
- Re: AMBER: xleap Chupakhin Vladimir (Tue Jan 30 2007 - 02:55:40 PST)
- Re: AMBER: xleap Navnit Kumar Mishra (Tue Jan 30 2007 - 03:53:11 PST)
- Re: AMBER: xleap Gustavo Seabra (Tue Jan 30 2007 - 07:57:11 PST)
- AMBER: questions about analysing LES results Kailee (Tue Jan 30 2007 - 09:00:40 PST)
- Fwd: AMBER: Improper angle by Antechamber Pavan G (Tue Jan 30 2007 - 10:46:34 PST)
- AMBER: Charges in TI calculations and leap Austin B. Yongye (Tue Jan 30 2007 - 11:35:50 PST)
- Re: AMBER: Charges in TI calculations and leap Ilyas Yildirim (Tue Jan 30 2007 - 11:48:00 PST)
- Re: AMBER: Charges in TI calculations and leap Austin B. Yongye (Tue Jan 30 2007 - 12:10:54 PST)
- Re: AMBER: Charges in TI calculations and leap David A. Case (Tue Jan 30 2007 - 13:24:33 PST)
- Re: AMBER: Charges in TI calculations and leap Austin B. Yongye (Tue Jan 30 2007 - 12:10:54 PST)
- Re: AMBER: Charges in TI calculations and leap Ilyas Yildirim (Tue Jan 30 2007 - 11:48:00 PST)
- AMBER: Ptraj: watershell and distance Esther Brugger (Tue Jan 30 2007 - 13:26:17 PST)
- Re: AMBER: Ptraj: watershell and distance Pavan G (Tue Jan 30 2007 - 14:01:07 PST)
- AMBER: I need some constant pressure MD help David Cerutti (Tue Jan 30 2007 - 20:39:06 PST)
- RE: AMBER: I need some constant pressure MD help Ross Walker (Tue Jan 30 2007 - 21:47:38 PST)
- AMBER: some questions about minimization and MD of DNA duplex with sander Chengwen Chen (Tue Jan 30 2007 - 23:44:13 PST)
- RE: AMBER: some questions about minimization and MD of DNA duplex with sander Ross Walker (Wed Jan 31 2007 - 08:36:27 PST)
- AMBER: mm_pbsa error Syed Tarique Moin (Wed Jan 31 2007 - 01:19:46 PST)
- AMBER: mm_pbsa error Syed Tarique Moin (Wed Jan 31 2007 - 01:19:02 PST)
- AMBER: ptraj khn _ (Wed Jan 31 2007 - 08:26:00 PST)
- Re: AMBER: ptraj Thomas Cheatham III (Wed Jan 31 2007 - 16:03:00 PST)
- AMBER: nonpolar solvation energy khn _ (Wed Jan 31 2007 - 08:33:55 PST)
- RE: AMBER: nonpolar solvation energy Ray Luo (Wed Jan 31 2007 - 11:37:34 PST)
- Re: AMBER: nonpolar solvation energy Carlos Simmerling (Wed Jan 31 2007 - 11:54:14 PST)
- RE: AMBER: nonpolar solvation energy Ray Luo (Wed Jan 31 2007 - 11:37:34 PST)
- Re: AMBER: format of .xyz files and pdb Steven Winfield (Wed Jan 31 2007 - 14:20:43 PST)
- Last message date: Sun Feb 04 2007 - 06:07:23 PST
- Archived on: Mon Jan 05 2009 - 06:10:32 PST
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