Re: AMBER: ptraj

From: Thomas Cheatham III <>
Date: Wed, 31 Jan 2007 17:03:00 -0700 (Mountain Standard Time)

> i did hbond analysis using ptraj and i have some
> difficulties in understanding the output
> can somebody please tell me what does the angle column
> represent? it cant be the hydrogen bond angle,
> because the angles are very small, less than 40
> degrees, is it some kind of deviation from the 120
> cutoff? and how about the value in the parenthesis?


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Received on Sun Feb 04 2007 - 06:07:20 PST
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