Hi,
First, this is where I am at:
0) I applied bug_fix_all as of 01-23-2007.
1) Compiling amber9 with gfortran, g95 so far. None of them succeeded.
2) Modified $AMBERHOME/src/arpack/stat.h: "/*double precision t0, t1,
t2, t3, t4, t5*/" to "/*real t0, t1, t2, t3, t4, t5*/"
3) Replaced some macro/definition with (len=*)////
I tried with and without 2) and 3), which got me further but now I
completely stuck at the following (see the end of the email). I compiled
tinker library for amoeba support but the missing symbols dont seem to
be in there.
Let me know if you have further fixing patches. Thank you for the
assistance.
Vinh.
{{{
Starting installation of Amber9 (parallel) at Wed Jan 24 09:37:21 EST 2007.
cd sander; make parallel
make[1]: Entering directory `/nfs/share/vto/tmp/amber9-mod/src/sander'
./checkparconf
cpp -traditional -I/nfs/share/vto/cdi/include -P -DMPI
-xassembler-with-cpp -Dsecond=ambsecond amoeba_interface.f >
_amoeba_interface.f
gfortran -c -O3 -fno-second-underscore -march=nocona -ffree-form -o
amoeba_interface.o _amoeba_interface.f
In file _amoeba_interface.f:133
use amoeba_bonds, only : AM_BONDS_broadcast
1
Error: Symbol 'am_bonds_broadcast' referenced at (1) not found in module
'amoeba_bonds'
In file _amoeba_interface.f:134
use amoeba_ureyb, only : AM_UREYB_broadcast
1
Error: Symbol 'am_ureyb_broadcast' referenced at (1) not found in module
'amoeba_ureyb'
In file _amoeba_interface.f:135
use amoeba_reg_angles, only : AM_REG_ANGLES_broadcast
1
Error: Symbol 'am_reg_angles_broadcast' referenced at (1) not found in
module 'amoeba_reg_angles'
In file _amoeba_interface.f:136
use amoeba_trig_angles, only : AM_TRIG_ANGLES_broadcast
1
Error: Symbol 'am_trig_angles_broadcast' referenced at (1) not found in
module 'amoeba_trig_angles'
In file _amoeba_interface.f:137
use amoeba_opbend_angles, only : AM_OPBEND_ANGLES_broadcast
1
Error: Symbol 'am_opbend_angles_broadcast' referenced at (1) not found
in module 'amoeba_opbend_angles'
In file _amoeba_interface.f:138
use amoeba_torsions, only : AM_TORSIONS_broadcast
1
Error: Symbol 'am_torsions_broadcast' referenced at (1) not found in
module 'amoeba_torsions'
In file _amoeba_interface.f:139
use amoeba_pitorsions, only : AM_PITORSIONS_broadcast
1
Error: Symbol 'am_pitorsions_broadcast' referenced at (1) not found in
module 'amoeba_pitorsions'
In file _amoeba_interface.f:140
use amoeba_stretch_bend, only : AM_STRETCH_BEND_broadcast
1
Error: Symbol 'am_stretch_bend_broadcast' referenced at (1) not found in
module 'amoeba_stretch_bend'
In file _amoeba_interface.f:141
use amoeba_torsion_torsion, only : AM_TOR_TOR_broadcast
1
Error: Symbol 'am_tor_tor_broadcast' referenced at (1) not found in
module 'amoeba_torsion_torsion'
In file _amoeba_interface.f:430
use amoeba_multipoles, only : AM_MPOLE_broadcast
1
Error: Symbol 'am_mpole_broadcast' referenced at (1) not found in module
'amoeba_multipoles'
make[1]: *** [amoeba_interface.o] Error 1
make[1]: Leaving directory `/nfs/share/vto/tmp/amber9-mod/src/sander'
make: *** [parallel] Error 2
}}}
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Received on Sun Jan 28 2007 - 06:07:07 PST
