On Sat, Jan 13, 2007, Syed Tarique Moin wrote:
>
> Plz guide me as, during solvation my protein is not fully enclosed in a
> solvent, i.e protein is found to be away from solvent and solvent is
> found at one end or half covered the protein.
First, this sounds like an imaging problem: have you used the image facility
in ptraj to get your protein/water system into a familiar orientation?
If this doesn't help (or you don't understand what I am saying), please give
more details: just saying that this happens "during solvation" is not enough.
We need to know more about what you actually did in order to offer any advice.
...regards....dac
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Received on Sun Jan 14 2007 - 06:08:11 PST
