RE: AMBER: amber 9

From: Sophie Barbe <sbarbe.insa-toulouse.fr>
Date: Wed, 10 Jan 2007 18:54:36 +0100

Dear Ross,

The error at the end of make.log is :
gcc -m32 -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-o Repeater.o Repeater.c
gcc -m32 -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-o Scrollbar.o Scrollbar.c
gcc -m32 -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-o ScrolledTable.o ScrolledTable.c
ScrolledTable.c:1167: error: conflicting types for ‘XawScrolledTableSetLocation’
ScrolledTable.h:99: error: previous declaration of ‘XawScrolledTableSetLocation’
was here
make[2]: *** [ScrolledTable.o] Error 1
make[2]: Leaving directory `/home/sbarbe/AMBER9/amber9/src/leap/src/Xraw'
make[1]: *** [install] Error 2
make[1]: Leaving directory `/home/sbarbe/AMBER9/amber9/src/leap'
make: *** [serial] Error 2


Could you help me please?

Thank

Sincerely,
Sophie


Selon Ross Walker <ross.rosswalker.co.uk>:

> Dear Sophie,
>
> > I have a problem with xleap in amber 9.
> > To compile amber 9 under fedora, I made :
> > ./configure ifort_ia32
> > make -i serial
>
> Why use the -i? Who advised you to do this? This simply means ignore errors
> but the errors are there for a reason, if you just ignore them you end up
> wasting yours and everyone elses time trying to wade through log files to
> find out where the original error occured.
>
> Do the following. Download http://amber.scripps.edu/bugfixes/9.0/bugfix.all
> and save it in your home directory.
>
> Then
>
> cd $AMBERHOME
> patch -p0 -N -r patch_rejects < ~/bugfix.all
> cd src
> ./configure -static ifort_ia32 (assuming this is a 32 bit machine)
> make clean
> make >& make.log
>
> You can then watch the progress with
>
> tail -f make.log
>
> If it ends with an error take a look at the error and see if you can work
> out what it means. Cutting and pasting the error into the search box on
> http://amber.ch.ic.ac.uk/archive/ can help.
>
> Then if you still can't work it out please post back to the amber list but
> this time attach the make.log file so people can see what the error is and
> then they might be able to help.
>
> It is also useful to know the version of fedora core. Show the results of:
>
> uname -a
> cat /proc/cpuinfo
> ifort -V
> gcc -v
>
> This can really help with troubleshooting.
>
> All the best
> Ross
>
> /\
> \/
> |\oss Walker
>
> | HPC Consultant and Staff Scientist |
> | San Diego Supercomputer Center |
> | Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
> | http://www.rosswalker.co.uk | PGP Key available on request |
>
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>
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Received on Sun Jan 14 2007 - 06:07:12 PST
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