Dear Sophie,
This seems to be an issue with Fedora Core 5. Try implementing what is
suggested in:
http://amber.ch.ic.ac.uk/archive/200605/0054.html
Then recompile - making sure that you do make clean before hand just to be
sure.
All the best
Ross
/\
\/
|\oss Walker
| HPC Consultant and Staff Scientist |
| San Diego Supercomputer Center |
| Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
|
http://www.rosswalker.co.uk | PGP Key available on request |
Note: Electronic Mail is not secure, has no guarantee of delivery, may not
be read every day, and should not be used for urgent or sensitive issues.
> -----Original Message-----
> From: owner-amber.scripps.edu
> [mailto:owner-amber.scripps.edu] On Behalf Of Sophie Barbe
> Sent: Wednesday, January 10, 2007 09:55
> To: amber.scripps.edu
> Subject: RE: AMBER: amber 9
>
>
> Dear Ross,
>
> The error at the end of make.log is :
> gcc -m32 -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64
> -D_LARGEFILE_SOURCE -O2
> -o Repeater.o Repeater.c
> gcc -m32 -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64
> -D_LARGEFILE_SOURCE -O2
> -o Scrollbar.o Scrollbar.c
> gcc -m32 -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64
> -D_LARGEFILE_SOURCE -O2
> -o ScrolledTable.o ScrolledTable.c
> ScrolledTable.c:1167: error: conflicting types for
> ‘XawScrolledTableSetLocation’
> ScrolledTable.h:99: error: previous declaration of
> ‘XawScrolledTableSetLocation’
> was here
> make[2]: *** [ScrolledTable.o] Error 1
> make[2]: Leaving directory
> `/home/sbarbe/AMBER9/amber9/src/leap/src/Xraw'
> make[1]: *** [install] Error 2
> make[1]: Leaving directory `/home/sbarbe/AMBER9/amber9/src/leap'
> make: *** [serial] Error 2
>
>
> Could you help me please?
>
> Thank
>
> Sincerely,
> Sophie
>
>
> Selon Ross Walker <ross.rosswalker.co.uk>:
>
> > Dear Sophie,
> >
> > > I have a problem with xleap in amber 9.
> > > To compile amber 9 under fedora, I made :
> > > ./configure ifort_ia32
> > > make -i serial
> >
> > Why use the -i? Who advised you to do this? This simply
> means ignore errors
> > but the errors are there for a reason, if you just ignore
> them you end up
> > wasting yours and everyone elses time trying to wade
> through log files to
> > find out where the original error occured.
> >
> > Do the following. Download
> http://amber.scripps.edu/bugfixes/9.0/bugfix.all
> > and save it in your home directory.
> >
> > Then
> >
> > cd $AMBERHOME
> > patch -p0 -N -r patch_rejects < ~/bugfix.all
> > cd src
> > ./configure -static ifort_ia32 (assuming this is a 32
> bit machine)
> > make clean
> > make >& make.log
> >
> > You can then watch the progress with
> >
> > tail -f make.log
> >
> > If it ends with an error take a look at the error and see
> if you can work
> > out what it means. Cutting and pasting the error into the
> search box on
> > http://amber.ch.ic.ac.uk/archive/ can help.
> >
> > Then if you still can't work it out please post back to the
> amber list but
> > this time attach the make.log file so people can see what
> the error is and
> > then they might be able to help.
> >
> > It is also useful to know the version of fedora core. Show
> the results of:
> >
> > uname -a
> > cat /proc/cpuinfo
> > ifort -V
> > gcc -v
> >
> > This can really help with troubleshooting.
> >
> > All the best
> > Ross
> >
> > /\
> > \/
> > |\oss Walker
> >
> > | HPC Consultant and Staff Scientist |
> > | San Diego Supercomputer Center |
> > | Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
> > | http://www.rosswalker.co.uk | PGP Key available on request |
> >
> > Note: Electronic Mail is not secure, has no guarantee of
> delivery, may not
> > be read every day, and should not be used for urgent or
> sensitive issues.
> >
> >
> >
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> >
>
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Received on Sun Jan 14 2007 - 06:07:12 PST
